Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G281200.1 | |
| TraesCS2B01G298600.1 | |
| TraesCS2D01G280100.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G543800.1 | Wheat | nucleus | 84.84 | 82.8 |
| TraesCS3B01G550200.2 | Wheat | nucleus | 54.51 | 53.85 |
| TraesCS7B01G321400.1 | Wheat | nucleus | 50.82 | 49.8 |
| TraesCS3B01G550000.1 | Wheat | nucleus | 49.59 | 49.39 |
| TraesCS3B01G549800.1 | Wheat | nucleus | 47.95 | 49.16 |
| TraesCS3B01G549700.1 | Wheat | nucleus | 41.8 | 48.8 |
| VIT_13s0047g00450.t01 | Wine grape | nucleus | 34.84 | 37.78 |
| KRG95137 | Soybean | cytosol, nucleus, plastid | 18.03 | 37.61 |
| CDY23861 | Canola | cytosol, plastid | 21.31 | 37.14 |
| GSMUA_Achr8P22120_001 | Banana | nucleus | 36.48 | 37.08 |
| VIT_08s0007g05300.t01 | Wine grape | nucleus | 35.66 | 35.51 |
| KRH66812 | Soybean | cytosol, nucleus, plastid | 34.84 | 35.27 |
| KRH66814 | Soybean | nucleus | 34.84 | 35.27 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.25 | 34.82 |
| Bra003261.1-P | Field mustard | mitochondrion | 26.23 | 34.78 |
| VIT_13s0073g00400.t01 | Wine grape | extracellular, golgi, nucleus | 33.61 | 34.02 |
| PGSC0003DMT400076759 | Potato | nucleus | 24.18 | 32.78 |
| AT2G41240.1 | Thale cress | nucleus | 31.97 | 32.23 |
| Solyc10g079680.1.1 | Tomato | nucleus | 25.0 | 31.61 |
| Solyc10g079650.1.1 | Tomato | nucleus | 31.97 | 31.2 |
| CDY47394 | Canola | nucleus | 32.38 | 30.98 |
| Bra014659.1-P | Field mustard | nucleus | 32.38 | 30.86 |
| CDX76025 | Canola | nucleus | 32.38 | 30.86 |
| CDY47392 | Canola | nucleus | 32.38 | 30.86 |
| CDY14758 | Canola | nucleus | 29.92 | 30.67 |
| CDX76026 | Canola | nucleus | 31.15 | 30.65 |
| Bra014658.1-P | Field mustard | nucleus | 31.15 | 30.65 |
| PGSC0003DMT400076775 | Potato | cytosol | 13.11 | 30.48 |
| Bra004609.1-P | Field mustard | nucleus | 30.33 | 30.45 |
| Bra014657.1-P | Field mustard | nucleus | 31.15 | 30.28 |
| CDY69684 | Canola | nucleus | 31.15 | 30.28 |
| CDY72354 | Canola | nucleus | 29.92 | 30.04 |
| CDX97997 | Canola | nucleus | 29.92 | 30.04 |
| AT3G56970.1 | Thale cress | nucleus | 31.15 | 30.04 |
| CDY68089 | Canola | nucleus | 30.74 | 29.88 |
| AT3G56980.1 | Thale cress | nucleus | 31.56 | 29.84 |
| CDY06938 | Canola | nucleus | 29.1 | 29.83 |
| Bra016946.1-P | Field mustard | nucleus | 29.1 | 29.83 |
| Bra014654.1-P | Field mustard | nucleus | 29.92 | 29.08 |
| CDX76031 | Canola | nucleus | 29.92 | 29.08 |
| Bra003260.1-P | Field mustard | nucleus | 29.1 | 28.51 |
| CDX67670 | Canola | nucleus | 29.1 | 28.51 |
| CDX77489 | Canola | cytosol, nucleus, plastid | 28.69 | 28.46 |
| Bra014971.1-P | Field mustard | cytosol, nucleus, plastid | 28.69 | 28.46 |
| CDX72086 | Canola | nucleus | 27.46 | 28.39 |
| CDX85121 | Canola | nucleus | 28.28 | 28.05 |
| Bra007290.1-P | Field mustard | nucleus | 28.28 | 27.71 |
| CDX67671 | Canola | nucleus | 28.28 | 27.71 |
| CDY47395 | Canola | nucleus | 25.0 | 27.6 |
| CDY71118 | Canola | nucleus | 27.87 | 27.42 |
| CDY06148 | Canola | nucleus | 27.87 | 27.31 |
| CDX72085 | Canola | nucleus | 27.87 | 27.09 |
| Bra041013.1-P | Field mustard | nucleus | 27.87 | 27.09 |
| CDY06147 | Canola | nucleus | 27.87 | 27.09 |
| CDX77490 | Canola | nucleus | 27.46 | 27.02 |
| CDX76032 | Canola | cytosol | 24.59 | 26.79 |
| Bra014653.1-P | Field mustard | cytosol | 24.59 | 26.79 |
| Bra014970.1-P | Field mustard | nucleus | 27.05 | 26.61 |
| CDX76027 | Canola | nucleus | 25.0 | 26.52 |
| CDY71388 | Canola | cytosol | 27.05 | 26.29 |
| Bra007289.1-P | Field mustard | nucleus | 26.23 | 25.7 |
| CDY06149 | Canola | nucleus | 26.23 | 25.7 |
| CDY47396 | Canola | mitochondrion | 30.33 | 25.08 |
| AT5G04150.1 | Thale cress | nucleus | 25.82 | 24.23 |
| CDX80905 | Canola | nucleus | 26.23 | 16.45 |
| Solyc10g079660.1.1 | Tomato | nucleus | 33.2 | 11.62 |
| CDX76023 | Canola | cytosol | 0.41 | 3.57 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.6 | MapMan:25.5.1.3 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MASH1/Ascl1a-like | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR13935 |
| SMART:SM00353 | SUPFAM:SSF47459 | EnsemblPlantsGene:TraesCS2B01G543700 | EnsemblPlants:TraesCS2B01G543700.1 | InterPro:bHLH_dom | TIGR:cd00083 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:741212130..741218771
Molecular Weight (calculated)
26606.7 Da
IEP (calculated)
7.737
GRAVY (calculated)
-0.395
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHQLYGDPS TNSFSPLEAQ IFSGQLPPWQ NINVDLDLTT SSAELSGRPA NLASSGSGSG GPGSHKKLSH NAYERDRRKQ LNELYLSLRS LLPDADHTKK
101: LSIPTTVCRA LKYIPELQKQ VENLEKKKEK LASANCKPGV LSASGSIAPT VSATCLNDKE IMVQISLLRD TDASTALPLS KCINVLENEG LELVSSSTSC
201: TFGNKMFCNL HLQRSQGALN MECPSFCDKL EQAIRRTAGL YLQH
101: LSIPTTVCRA LKYIPELQKQ VENLEKKKEK LASANCKPGV LSASGSIAPT VSATCLNDKE IMVQISLLRD TDASTALPLS KCINVLENEG LELVSSSTSC
201: TFGNKMFCNL HLQRSQGALN MECPSFCDKL EQAIRRTAGL YLQH
001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT
Arabidopsis Description
BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.