Factsheet for Bra003261.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000495.1-P
Bra011972.1-P
Bra034392.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56980.1	Bra000495.1-P	AT2G28160.1	18268542
AT3G56980.1	Bra011972.1-P	AT2G28160.1	18268542
AT3G56980.1	Bra034392.1-P	AT2G28160.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67671	Canola	nucleus	96.2	71.08
Bra003260.1-P	Field mustard	nucleus	85.87	63.45
Bra007290.1-P	Field mustard	nucleus	76.63	56.63
Bra014657.1-P	Field mustard	nucleus	75.0	54.98
Bra014654.1-P	Field mustard	nucleus	72.28	52.99
Bra014971.1-P	Field mustard	cytosol, nucleus, plastid	70.65	52.85
Bra007289.1-P	Field mustard	nucleus	70.65	52.21
Bra014659.1-P	Field mustard	nucleus	71.2	51.17
Bra014970.1-P	Field mustard	nucleus	68.48	50.81
AT3G56980.1	Thale cress	nucleus	71.2	50.78
Bra014658.1-P	Field mustard	nucleus	67.39	50.0
Bra041013.1-P	Field mustard	nucleus	65.76	48.21
Bra004609.1-P	Field mustard	nucleus	51.63	39.09
Bra016946.1-P	Field mustard	nucleus	50.0	38.66
Bra014653.1-P	Field mustard	cytosol	45.65	37.5
VIT_08s0007g05300.t01	Wine grape	nucleus	44.02	33.06
PGSC0003DMT400076759	Potato	nucleus	32.07	32.78
VIT_13s0047g00450.t01	Wine grape	nucleus	39.67	32.44
Solyc10g079680.1.1	Tomato	nucleus	32.07	30.57
KRH66812	Soybean	cytosol, nucleus, plastid	39.67	30.29
KRH66814	Soybean	nucleus	39.67	30.29
KRG95137	Soybean	cytosol, nucleus, plastid	18.48	29.06
VIT_13s0073g00400.t01	Wine grape	extracellular, golgi, nucleus	38.04	29.05
Zm00001d011847_P001	Maize	nucleus	33.7	27.07
Zm00001d042062_P001	Maize	nucleus	32.07	26.58
TraesCS2A01G515300.1	Wheat	nucleus	36.41	26.48
TraesCS2B01G543700.1	Wheat	nucleus	34.78	26.23
HORVU2Hr1G114070.1	Barley	nucleus	35.87	26.09
TraesCS2B01G543800.1	Wheat	nucleus	35.33	26.0
TraesCS3B01G549700.1	Wheat	nucleus	29.35	25.84
TraesCS2D01G517000.1	Wheat	nucleus	35.33	25.69
GSMUA_Achr8P22120_001	Banana	nucleus	32.61	25.0
Solyc10g079650.1.1	Tomato	nucleus	33.7	24.8
HORVU3Hr1G108680.1	Barley	nucleus	33.15	24.8
TraesCS3D01G495400.1	Wheat	nucleus	32.07	24.79
Os01t0952800-01	Rice	nucleus	33.15	24.7
KXG34133	Sorghum	nucleus	32.61	24.59
TraesCS3D01G495700.1	Wheat	nucleus	32.61	24.29
TraesCS3A01G489700.1	Wheat	nucleus	32.61	24.29
TraesCS3B01G550200.2	Wheat	nucleus	32.61	24.29
TraesCS3A01G489500.1	Wheat	nucleus	30.98	23.95
GSMUA_AchrUn_...	Banana	nucleus	32.07	23.89
HORVU3Hr1G108670.2	Barley	nucleus	30.98	23.75
HORVU3Hr1G108660.1	Barley	nucleus	29.89	23.71
TraesCS3D01G495600.1	Wheat	nucleus	31.52	23.67
TraesCS3A01G489600.1	Wheat	nucleus	31.52	23.67
TraesCS3B01G549800.1	Wheat	nucleus	30.43	23.53
TraesCS3A01G489400.1	Wheat	nucleus	29.35	23.28
TraesCS3B01G550000.1	Wheat	nucleus	30.98	23.27
TraesCS3D01G495300.1	Wheat	nucleus	28.8	22.65
TraesCS7B01G321400.1	Wheat	nucleus	29.89	22.09
TraesCS7A01G421000.1	Wheat	nucleus	30.43	22.05
PGSC0003DMT400076775	Potato	cytosol	10.33	18.1
Solyc10g079660.1.1	Tomato	nucleus	36.96	9.76

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.6	MapMan:25.5.1.3	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra003261	EnsemblPlants:Bra003261.1
EnsemblPlants:Bra003261.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4CGC8
InterPro:MASH1/Ascl1a-like	PFAM:PF00010	PFscan:PS50888	PFscan:PS51257	PANTHER:PTHR13935	PANTHER:PTHR13935:SF41
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000254153F	InterPro:bHLH_dom	SEG:seg	:

Description

AT3G56980 (E=5e-065) BHLH039, ORG3 | BHLH039; DNA binding / transcription factor

Coordinates

chrA07:-:12249163..12249868

Molecular Weight (calculated)

21012.3 Da

IEP (calculated)

9.086

GRAVY (calculated)

-0.368

Length

184 amino acids

Sequence
(BLAST)

001: MIKKLSHNAN ERYRRKQMNS LFSTLCSCLP ASYQLNKLSI PQTVLRTVKY IPDLQEQVKK LTQKKEDLLV RALGQRDMES YVKQHPQAVA SYVSTVFATK
101: NGDNEVMVQI SSSTIHKFSI YNVLSGLEED GFVVVDVSSS SSRGERLFYT LHLQVGKTDS NKIICEELSQ KILYLYEECG NSFR

Best Arabidopsis Sequence Match ( AT2G41240.1 )
(BLAST)

001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT

Arabidopsis Description

BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.