Factsheet for Bra007290.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000495.1-P
Bra011972.1-P
Bra034392.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56980.1	Bra000495.1-P	AT2G28160.1	18268542
AT3G56980.1	Bra011972.1-P	AT2G28160.1	18268542
AT3G56980.1	Bra034392.1-P	AT2G28160.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06148	Canola	nucleus	99.6	99.6
Bra014971.1-P	Field mustard	cytosol, nucleus, plastid	77.51	78.46
Bra003261.1-P	Field mustard	mitochondrion	56.63	76.63
Bra007289.1-P	Field mustard	nucleus	75.5	75.5
Bra014970.1-P	Field mustard	nucleus	74.7	75.0
Bra041013.1-P	Field mustard	nucleus	72.69	72.11
Bra003260.1-P	Field mustard	nucleus	71.49	71.49
Bra014657.1-P	Field mustard	nucleus	71.08	70.52
Bra014659.1-P	Field mustard	nucleus	71.08	69.14
Bra014658.1-P	Field mustard	nucleus	68.27	68.55
Bra014654.1-P	Field mustard	nucleus	67.87	67.33
AT3G56980.1	Thale cress	nucleus	69.08	66.67
Bra016946.1-P	Field mustard	nucleus	51.0	53.36
Bra004609.1-P	Field mustard	nucleus	50.6	51.85
Bra014653.1-P	Field mustard	cytosol	45.38	50.45
VIT_13s0047g00450.t01	Wine grape	nucleus	34.94	38.67
KRG95137	Soybean	cytosol, nucleus, plastid	18.07	38.46
VIT_08s0007g05300.t01	Wine grape	nucleus	37.35	37.96
KRH66814	Soybean	nucleus	36.55	37.76
KRH66812	Soybean	cytosol, nucleus, plastid	35.74	36.93
PGSC0003DMT400076759	Potato	nucleus	26.51	36.67
VIT_13s0073g00400.t01	Wine grape	extracellular, golgi, nucleus	34.14	35.27
Solyc10g079680.1.1	Tomato	nucleus	26.1	33.68
Zm00001d011847_P001	Maize	nucleus	28.51	31.0
Zm00001d042062_P001	Maize	nucleus	26.91	30.18
GSMUA_Achr8P22120_001	Banana	nucleus	28.92	30.0
TraesCS3B01G549700.1	Wheat	nucleus	24.9	29.67
Solyc10g079650.1.1	Tomato	nucleus	29.32	29.2
TraesCS3B01G550200.2	Wheat	nucleus	28.92	29.15
HORVU2Hr1G114070.1	Barley	nucleus	29.32	28.85
TraesCS2D01G517000.1	Wheat	nucleus	29.32	28.85
TraesCS2B01G543800.1	Wheat	nucleus	28.92	28.8
TraesCS2A01G515300.1	Wheat	nucleus	28.92	28.46
HORVU3Hr1G108680.1	Barley	nucleus	28.11	28.46
TraesCS2B01G543700.1	Wheat	nucleus	27.71	28.28
TraesCS3D01G495700.1	Wheat	nucleus	27.71	27.94
Os01t0952800-01	Rice	nucleus	27.71	27.94
TraesCS3A01G489700.1	Wheat	nucleus	27.71	27.94
KXG34133	Sorghum	nucleus	27.31	27.87
TraesCS3B01G549800.1	Wheat	nucleus	26.51	27.73
TraesCS3D01G495400.1	Wheat	nucleus	26.51	27.73
GSMUA_AchrUn_...	Banana	nucleus	27.31	27.53
TraesCS3A01G489500.1	Wheat	nucleus	26.1	27.31
TraesCS3A01G489400.1	Wheat	nucleus	25.3	27.16
HORVU3Hr1G108660.1	Barley	nucleus	25.3	27.16
HORVU3Hr1G108670.2	Barley	nucleus	26.1	27.08
TraesCS3A01G489600.1	Wheat	nucleus	26.51	26.94
TraesCS3D01G495600.1	Wheat	nucleus	26.51	26.94
PGSC0003DMT400076775	Potato	cytosol	11.24	26.67
TraesCS3B01G550000.1	Wheat	nucleus	26.1	26.53
TraesCS7B01G321400.1	Wheat	nucleus	26.51	26.51
TraesCS3D01G495300.1	Wheat	nucleus	24.9	26.5
TraesCS7A01G421000.1	Wheat	nucleus	25.7	25.2
Solyc10g079660.1.1	Tomato	nucleus	33.73	12.05

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.6	MapMan:25.5.1.3	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra007290	EnsemblPlants:Bra007290.1
EnsemblPlants:Bra007290.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4CSU8
InterPro:MASH1/Ascl1a-like	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR13935	PANTHER:PTHR13935:SF41	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002542C72	InterPro:bHLH_dom	SEG:seg	:	:

Description

AT3G56980 (E=8e-078) BHLH039, ORG3 | BHLH039; DNA binding / transcription factor

Coordinates

chrA09:-:28404790..28405686

Molecular Weight (calculated)

28520.0 Da

IEP (calculated)

8.579

GRAVY (calculated)

-0.502

Length

249 amino acids

Sequence
(BLAST)

001: MHALDTPLFP NCQWGSMVEY ESYNVVGDKY HSNDTFLDFP VPKTVHHQPS LGVSVPSERN GTDNDSVMIK KLNHNANERN RRKKINYLFS SLSSCLPGSN
101: ETKKLSIPQT VSRSVQYIPE LQEQVKKLKQ KKEDLLVRVL GQRERHVKPQ PKVVASDVST VFATMLRDNE VMVQISSSKI HNFSIYHVLS GLEEDGFVLV
201: DVSSSSSRGE RLFYTLHLQV DKIDHYKLIC EELSQRVLYL YEKCGNSFK

Best Arabidopsis Sequence Match ( AT2G41240.1 )
(BLAST)

001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT

Arabidopsis Description

BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.