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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS2A01G281200.1
TraesCS2B01G298600.1
TraesCS2D01G280100.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G56970.1 TraesCS2A01G281200.1 AT2G28160.1 18268542
AT3G56970.1 TraesCS2B01G298600.1 AT2G28160.1 18268542
AT3G56970.1 TraesCS2D01G280100.1 AT2G28160.1 18268542
AT3G56980.1 TraesCS2A01G281200.1 AT2G28160.1 18268542
AT3G56980.1 TraesCS2B01G298600.1 AT2G28160.1 18268542
AT3G56980.1 TraesCS2D01G280100.1 AT2G28160.1 18268542
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7B01G321400.1 Wheat nucleus 91.34 93.17
TraesCS3A01G489700.1 Wheat nucleus 53.15 54.66
TraesCS3A01G489400.1 Wheat nucleus 47.24 51.72
TraesCS3A01G489500.1 Wheat nucleus 47.24 50.42
TraesCS2A01G515300.1 Wheat nucleus 49.61 49.8
TraesCS3A01G489600.1 Wheat nucleus 47.64 49.39
KRG95137 Soybean cytosol, nucleus, plastid 16.54 35.9
GSMUA_Achr8P22120_001 Banana nucleus 33.07 35.0
CDY23861 Canola cytosol, plastid 18.9 34.29
VIT_13s0047g00450.t01 Wine grape nucleus 30.32 34.22
GSMUA_AchrUn_... Banana nucleus 32.68 33.6
KRH66812 Soybean cytosol, nucleus, plastid 31.1 32.78
VIT_08s0007g05300.t01 Wine grape nucleus 31.1 32.24
VIT_13s0073g00400.t01 Wine grape extracellular, golgi, nucleus 29.92 31.54
KRH66814 Soybean nucleus 29.53 31.12
PGSC0003DMT400076759 Potato nucleus 22.05 31.11
Solyc10g079680.1.1 Tomato nucleus 23.23 30.57
Bra003261.1-P Field mustard mitochondrion 22.05 30.43
Bra004609.1-P Field mustard nucleus 28.74 30.04
CDY14758 Canola nucleus 27.95 29.83
PGSC0003DMT400076775 Potato cytosol 12.2 29.52
CDY06938 Canola nucleus 27.56 29.41
Bra016946.1-P Field mustard nucleus 27.56 29.41
CDY72354 Canola nucleus 27.95 29.22
CDX97997 Canola nucleus 27.95 29.22
Solyc10g079650.1.1 Tomato nucleus 28.74 29.2
CDX76025 Canola nucleus 29.13 28.91
Bra014659.1-P Field mustard nucleus 29.13 28.91
CDY47392 Canola nucleus 29.13 28.91
Bra014657.1-P Field mustard nucleus 28.35 28.69
CDX76026 Canola nucleus 27.95 28.63
Bra014658.1-P Field mustard nucleus 27.95 28.63
CDY69684 Canola nucleus 27.95 28.29
CDY47394 Canola nucleus 28.35 28.24
AT3G56970.1 Thale cress nucleus 27.95 28.06
CDY68089 Canola nucleus 27.56 27.89
AT3G56980.1 Thale cress nucleus 27.95 27.52
Bra003260.1-P Field mustard nucleus 26.77 27.31
CDX85121 Canola nucleus 26.38 27.24
CDX76031 Canola nucleus 26.77 27.09
Bra014654.1-P Field mustard nucleus 26.77 27.09
CDX67671 Canola nucleus 26.38 26.91
CDX67670 Canola nucleus 26.38 26.91
AT2G41240.1 Thale cress nucleus 25.59 26.86
Bra014653.1-P Field mustard cytosol 23.62 26.79
CDX76032 Canola cytosol 23.62 26.79
CDY47395 Canola nucleus 23.23 26.7
CDX77489 Canola cytosol, nucleus, plastid 25.2 26.02
Bra014971.1-P Field mustard cytosol, nucleus, plastid 25.2 26.02
CDX72085 Canola nucleus 25.59 25.9
Bra007290.1-P Field mustard nucleus 25.2 25.7
CDX72086 Canola nucleus 23.62 25.42
CDY06148 Canola nucleus 24.8 25.3
Bra041013.1-P Field mustard nucleus 24.8 25.1
CDY06147 Canola nucleus 24.8 25.1
CDY71118 Canola nucleus 24.41 25.0
CDX77490 Canola nucleus 24.02 24.6
CDY71388 Canola cytosol 24.02 24.3
Bra014970.1-P Field mustard nucleus 23.62 24.19
CDY06149 Canola nucleus 23.23 23.69
Bra007289.1-P Field mustard nucleus 23.23 23.69
AT5G04150.1 Thale cress nucleus 24.02 23.46
CDY47396 Canola mitochondrion 26.77 23.05
CDX76027 Canola nucleus 20.87 23.04
CDX80905 Canola nucleus 22.83 14.91
Solyc10g079660.1.1 Tomato nucleus 29.92 10.9
CDX76023 Canola cytosol 0.39 3.57
Protein Annotations
MapMan:15.5.32MapMan:25.4.1.6MapMan:25.5.1.3Gene3D:4.10.280.10ncoils:CoilGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0006139GO:GO:0006357
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0046983InterPro:HLH_DNA-bd_sf
InterPro:IPR011598InterPro:IPR036638InterPro:MASH1/Ascl1a-likePFAM:PF00010PFscan:PS50888PANTHER:PTHR13935
PANTHER:PTHR13935:SF41SMART:SM00353SUPFAM:SSF47459EnsemblPlantsGene:TraesCS7A01G421000EnsemblPlants:TraesCS7A01G421000.1InterPro:bHLH_dom
TIGR:cd00083SEG:seg::::
Description
No Description!
Coordinates
chr7A:+:612112226..612118920
Molecular Weight (calculated)
28438.7 Da
IEP (calculated)
5.603
GRAVY (calculated)
-0.444
Length
254 amino acids
Sequence
(BLAST)
001: MDLQQVMEHQ QFDDAVPSSM IWPLEADNGF TDELLSLQLP DLDLDFDIHE FSGPATAPAK AASSGGSGLV GSGSGSHKKL SHNAYERDRR TQLNQLYSTL
101: RSLIPNADHT KKLSIPTTVC QVLDYIPELQ KQVEDLEKKK QELTRAKCRE RLQRVKDNTG RIVSATPLDG NEIMVQVSLL SNMAASLPLS KCINVFENEG
201: LHLISSSTFS TEVNRTFYSF HFEGKQTINK EYCPAFFCHE LEKAFKEKVG PCLE
Best Arabidopsis Sequence Match ( AT3G56970.1 )
(BLAST)
001: MCALVPSFFT NFGWPSTNQY ESYYGAGDNL NNGTFLELTV PQTYEVTHHQ NSLGVSVSSE GNEIDNNPVV VKKLNHNASE RDRRKKINTL FSSLRSCLPA
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN
Arabidopsis Description
ORG2Transcription factor ORG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1K1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.