CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71377
CDX77160
CDX83286
CDY04543
CDY30505
CDY31199

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56980.1	CDX71377	AT2G28160.1	18268542
AT3G56980.1	CDX77160	AT2G28160.1	18268542
AT3G56980.1	CDX83286	AT2G28160.1	18268542
AT3G56980.1	CDY04543	AT2G28160.1	18268542
AT3G56980.1	CDY30505	AT2G28160.1	18268542
AT3G56980.1	CDY31199	AT2G28160.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06148	Canola	nucleus	95.76	90.76
CDX77489	Canola	cytosol, nucleus, plastid	76.27	73.17
CDY71388	Canola	cytosol	77.54	72.91
CDX85121	Canola	nucleus	75.42	72.36
CDY71118	Canola	nucleus	75.42	71.77
CDY06149	Canola	nucleus	74.58	70.68
CDX77490	Canola	nucleus	74.15	70.56
CDX72085	Canola	nucleus	74.58	70.12
CDY06147	Canola	nucleus	72.88	68.53
CDX67670	Canola	nucleus	71.19	67.47
CDX67671	Canola	nucleus	70.76	67.07
CDX76025	Canola	nucleus	70.34	64.84
CDY47392	Canola	nucleus	70.34	64.84
CDY47394	Canola	nucleus	69.92	64.71
CDX76023	Canola	cytosol	7.63	64.29
CDY69684	Canola	nucleus	68.22	64.14
CDY68089	Canola	nucleus	68.22	64.14
CDX76026	Canola	nucleus	66.95	63.71
AT3G56980.1	Thale cress	nucleus	69.49	63.57
CDX76031	Canola	nucleus	66.95	62.95
CDY47395	Canola	nucleus	57.63	61.54
CDX76027	Canola	nucleus	55.08	56.52
CDY47396	Canola	mitochondrion	63.56	50.85
CDY14758	Canola	nucleus	49.15	48.74
CDY06938	Canola	nucleus	49.15	48.74
CDX76032	Canola	cytosol	45.76	48.21
CDY23861	Canola	cytosol, plastid	27.97	47.14
CDX97997	Canola	nucleus	48.31	46.91
CDY72354	Canola	nucleus	48.31	46.91
PGSC0003DMT400076759	Potato	nucleus	27.54	36.11
VIT_13s0047g00450.t01	Wine grape	nucleus	33.47	35.11
VIT_08s0007g05300.t01	Wine grape	nucleus	35.59	34.29
KRH66814	Soybean	nucleus	34.75	34.02
KRG95137	Soybean	cytosol, nucleus, plastid	16.53	33.33
KRH66812	Soybean	cytosol, nucleus, plastid	33.9	33.2
Solyc10g079680.1.1	Tomato	nucleus	27.12	33.16
VIT_13s0073g00400.t01	Wine grape	extracellular, golgi, nucleus	32.2	31.54
Zm00001d011847_P001	Maize	nucleus	27.97	28.82
TraesCS3B01G549700.1	Wheat	nucleus	25.42	28.71
Zm00001d042062_P001	Maize	nucleus	26.69	28.38
TraesCS3B01G550200.2	Wheat	nucleus	29.24	27.94
GSMUA_Achr8P22120_001	Banana	nucleus	28.39	27.92
TraesCS2D01G517000.1	Wheat	nucleus	29.66	27.67
TraesCS2B01G543800.1	Wheat	nucleus	29.24	27.6
TraesCS2B01G543700.1	Wheat	nucleus	28.39	27.46
HORVU2Hr1G114070.1	Barley	nucleus	29.24	27.27
TraesCS2A01G515300.1	Wheat	nucleus	29.24	27.27
HORVU3Hr1G108680.1	Barley	nucleus	28.39	27.24
KXG34133	Sorghum	nucleus	27.97	27.05
TraesCS3D01G495700.1	Wheat	nucleus	27.97	26.72
TraesCS3A01G489700.1	Wheat	nucleus	27.97	26.72
Solyc10g079650.1.1	Tomato	nucleus	27.97	26.4
TraesCS3A01G489400.1	Wheat	nucleus	25.85	26.29
HORVU3Hr1G108660.1	Barley	nucleus	25.85	26.29
TraesCS3A01G489600.1	Wheat	nucleus	27.12	26.12
TraesCS3D01G495600.1	Wheat	nucleus	27.12	26.12
TraesCS3B01G549800.1	Wheat	nucleus	26.27	26.05
TraesCS3A01G489500.1	Wheat	nucleus	26.27	26.05
TraesCS3D01G495400.1	Wheat	nucleus	26.27	26.05
Os01t0952800-01	Rice	nucleus	27.12	25.91
HORVU3Hr1G108670.2	Barley	nucleus	26.27	25.83
TraesCS3B01G550000.1	Wheat	nucleus	26.69	25.71
TraesCS3D01G495300.1	Wheat	nucleus	25.0	25.21
GSMUA_AchrUn_...	Banana	nucleus	26.27	25.1
TraesCS7B01G321400.1	Wheat	nucleus	26.27	24.9
TraesCS7A01G421000.1	Wheat	nucleus	25.42	23.62
PGSC0003DMT400076775	Potato	cytosol	9.32	20.95
CDX80905	Canola	nucleus	28.39	17.22
Solyc10g079660.1.1	Tomato	nucleus	32.2	10.9

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.6	MapMan:25.5.1.3	Gene3D:4.10.280.10	GO:A0A078C500	EnsemblPlants:CDX72086
ProteinID:CDX72086	ProteinID:CDX72086.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00155885001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	InterPro:MASH1/Ascl1a-like	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR13935	PANTHER:PTHR13935:SF41
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EE4F4C	InterPro:bHLH_dom	:	:

Description

BnaC08g27880D

Coordinates

chrLK031795:+:2287648..2288798

Molecular Weight (calculated)

27207.6 Da

IEP (calculated)

8.979

GRAVY (calculated)

-0.507

Length

236 amino acids

Sequence
(BLAST)

001: MVEYESYNVV GDKYHSNGTF LDFPVPKTYE VVHHQPSLGV SVPSERNGTD NDSVMIKKLN HNANERNRRK KINYLFSILS SCLPGSNETK KLSIPRTVSR
101: SVQYIPELQE QVKKLKHKKE DLLVRVLGQR ERHVKPQPKV VASDVSTVFA TMLRDNEVMV QISSSKIHNF SIYHVMSGLE EDEFVLVDVS SSSSRGERLF
201: YTLHLQVDKI DHYKLICEEL SQRVLYLYEK CGNSFK

Best Arabidopsis Sequence Match ( AT2G41240.1 )
(BLAST)

001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT

Arabidopsis Description

BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.