Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0061g00720.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56970.1 | VIT_06s0061g00720.t01 | AT2G28160.1 | 18268542 |
| AT3G56980.1 | VIT_06s0061g00720.t01 | AT2G28160.1 | 18268542 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0047g00450.t01 | Wine grape | nucleus | 80.91 | 86.67 |
| VIT_08s0007g05300.t01 | Wine grape | nucleus | 75.1 | 73.88 |
| KRG95137 | Soybean | cytosol, nucleus, plastid | 24.07 | 49.57 |
| KRH66812 | Soybean | cytosol, nucleus, plastid | 44.81 | 44.81 |
| KRH66814 | Soybean | nucleus | 44.4 | 44.4 |
| PGSC0003DMT400076759 | Potato | nucleus | 31.95 | 42.78 |
| PGSC0003DMT400076775 | Potato | cytosol | 18.26 | 41.9 |
| Solyc10g079650.1.1 | Tomato | nucleus | 43.15 | 41.6 |
| AT3G56970.1 | Thale cress | nucleus | 42.74 | 40.71 |
| Bra014657.1-P | Field mustard | nucleus | 41.91 | 40.24 |
| CDY23861 | Canola | cytosol, plastid | 23.24 | 40.0 |
| CDX76026 | Canola | nucleus | 41.08 | 39.92 |
| Bra014658.1-P | Field mustard | nucleus | 41.08 | 39.92 |
| CDY47394 | Canola | nucleus | 41.91 | 39.61 |
| CDX76025 | Canola | nucleus | 41.91 | 39.45 |
| CDY47392 | Canola | nucleus | 41.91 | 39.45 |
| Bra014659.1-P | Field mustard | nucleus | 41.91 | 39.45 |
| CDX76031 | Canola | nucleus | 41.08 | 39.44 |
| CDY69684 | Canola | nucleus | 41.08 | 39.44 |
| CDY68089 | Canola | nucleus | 41.08 | 39.44 |
| Bra014654.1-P | Field mustard | nucleus | 41.08 | 39.44 |
| AT3G56980.1 | Thale cress | nucleus | 41.91 | 39.15 |
| CDY47395 | Canola | nucleus | 35.68 | 38.91 |
| Solyc10g079680.1.1 | Tomato | nucleus | 31.12 | 38.86 |
| Bra003261.1-P | Field mustard | mitochondrion | 29.05 | 38.04 |
| Bra016946.1-P | Field mustard | nucleus | 36.51 | 36.97 |
| CDY14758 | Canola | nucleus | 36.51 | 36.97 |
| CDY06938 | Canola | nucleus | 35.68 | 36.13 |
| Zm00001d042062_P001 | Maize | nucleus | 33.2 | 36.04 |
| AT2G41240.1 | Thale cress | nucleus | 36.1 | 35.95 |
| Bra004609.1-P | Field mustard | nucleus | 35.27 | 34.98 |
| CDX67670 | Canola | nucleus | 36.1 | 34.94 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.68 | 34.82 |
| AT5G04150.1 | Thale cress | nucleus | 37.34 | 34.62 |
| CDY72354 | Canola | nucleus | 34.85 | 34.57 |
| CDX97997 | Canola | nucleus | 34.85 | 34.57 |
| Bra003260.1-P | Field mustard | nucleus | 35.68 | 34.54 |
| Zm00001d011847_P001 | Maize | nucleus | 32.78 | 34.5 |
| CDX85121 | Canola | nucleus | 34.85 | 34.15 |
| Bra007290.1-P | Field mustard | nucleus | 35.27 | 34.14 |
| HORVU2Hr1G114070.1 | Barley | nucleus | 35.68 | 33.99 |
| CDX77490 | Canola | nucleus | 34.85 | 33.87 |
| CDY71118 | Canola | nucleus | 34.85 | 33.87 |
| Bra014971.1-P | Field mustard | cytosol, nucleus, plastid | 34.44 | 33.74 |
| CDX77489 | Canola | cytosol, nucleus, plastid | 34.44 | 33.74 |
| CDY06148 | Canola | nucleus | 34.85 | 33.73 |
| TraesCS2B01G543700.1 | Wheat | nucleus | 34.02 | 33.61 |
| Bra014970.1-P | Field mustard | nucleus | 34.44 | 33.47 |
| CDX67671 | Canola | nucleus | 34.44 | 33.33 |
| GSMUA_Achr8P22120_001 | Banana | nucleus | 33.2 | 33.33 |
| TraesCS2D01G517000.1 | Wheat | nucleus | 34.85 | 33.2 |
| TraesCS2B01G543800.1 | Wheat | nucleus | 34.44 | 33.2 |
| Os01t0952800-01 | Rice | nucleus | 34.02 | 33.2 |
| TraesCS3B01G549700.1 | Wheat | nucleus | 28.63 | 33.01 |
| TraesCS2A01G515300.1 | Wheat | nucleus | 34.44 | 32.81 |
| TraesCS3B01G550200.2 | Wheat | nucleus | 33.61 | 32.79 |
| CDY71388 | Canola | cytosol | 34.02 | 32.67 |
| CDX72085 | Canola | nucleus | 34.02 | 32.67 |
| TraesCS3A01G489700.1 | Wheat | nucleus | 33.2 | 32.39 |
| TraesCS3D01G495700.1 | Wheat | nucleus | 33.2 | 32.39 |
| TraesCS3B01G549800.1 | Wheat | nucleus | 31.95 | 32.35 |
| TraesCS3D01G495400.1 | Wheat | nucleus | 31.95 | 32.35 |
| CDX72086 | Canola | nucleus | 31.54 | 32.2 |
| Bra007289.1-P | Field mustard | nucleus | 33.2 | 32.13 |
| CDY06149 | Canola | nucleus | 33.2 | 32.13 |
| KXG34133 | Sorghum | nucleus | 32.37 | 31.97 |
| Bra041013.1-P | Field mustard | nucleus | 33.2 | 31.87 |
| CDY06147 | Canola | nucleus | 33.2 | 31.87 |
| CDX76027 | Canola | nucleus | 30.29 | 31.74 |
| TraesCS3A01G489500.1 | Wheat | nucleus | 31.12 | 31.51 |
| TraesCS3B01G550000.1 | Wheat | nucleus | 31.95 | 31.43 |
| HORVU3Hr1G108680.1 | Barley | nucleus | 31.95 | 31.3 |
| HORVU3Hr1G108670.2 | Barley | nucleus | 31.12 | 31.25 |
| TraesCS3D01G495600.1 | Wheat | nucleus | 31.54 | 31.02 |
| TraesCS7B01G321400.1 | Wheat | nucleus | 31.95 | 30.92 |
| CDX76032 | Canola | cytosol | 28.63 | 30.8 |
| Bra014653.1-P | Field mustard | cytosol | 28.63 | 30.8 |
| TraesCS3A01G489600.1 | Wheat | nucleus | 31.12 | 30.61 |
| TraesCS3D01G495300.1 | Wheat | nucleus | 29.46 | 30.34 |
| HORVU3Hr1G108660.1 | Barley | nucleus | 29.05 | 30.17 |
| CDY47396 | Canola | mitochondrion | 36.93 | 30.17 |
| TraesCS7A01G421000.1 | Wheat | nucleus | 31.54 | 29.92 |
| TraesCS3A01G489400.1 | Wheat | nucleus | 28.63 | 29.74 |
| CDX80905 | Canola | nucleus | 34.44 | 21.34 |
| Solyc10g079660.1.1 | Tomato | nucleus | 45.64 | 15.78 |
| CDX76023 | Canola | cytosol | 0.41 | 3.57 |
Protein Annotations
| EntrezGene:100252974 | wikigene:100252974 | MapMan:15.5.32 | MapMan:25.4.1.6 | MapMan:25.5.1.3 | Gene3D:4.10.280.10 |
| ProteinID:CCB49566 | ProteinID:CCB49566.1 | ncoils:Coil | UniProt:F6HBH6 | EMBL:FN595510 | GO:GO:0000977 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0046983 | GO:GO:0090575 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EntrezGene:LOC100252974 |
| wikigene:LOC100252974 | InterPro:MASH1/Ascl1a-like | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR13935 | PANTHER:PTHR13935:SF41 |
| SMART:SM00353 | SUPFAM:SSF47459 | TMHMM:TMhelix | UniParc:UPI000210844A | ArrayExpress:VIT_13s0073g00400 | EnsemblPlantsGene:VIT_13s0073g00400 |
| EnsemblPlants:VIT_13s0073g00400.t01 | RefSeq:XP_002267985 | RefSeq:XP_002267985.1 | InterPro:bHLH_dom | SEG:seg | : |
Description
No Description!
Coordinates
chr13:-:14129019..14129868
Molecular Weight (calculated)
27195.7 Da
IEP (calculated)
7.663
GRAVY (calculated)
-0.041
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAFSPPLFP TLGWPLEDPI SHAQNYIYGE TETSESFLHL PSSQPQVELN CSTPYAAVSG NPTMVKKLNH NVSVRDRRKK INSLYSSLRS LLPSADQVKK
101: LSIPSTVSCV LKYIPELQRQ VERLIQKKEE FLSKISREGD LIHLENQRNG TLGSSLSAVS ARRLSDREIV VQISTFKVHE SPLSEVLLNL EEDGLLVINA
201: SSFESFGGRV FYNLHLQVLF LSIFFLISFS FSPLNFYSFI I
101: LSIPSTVSCV LKYIPELQRQ VERLIQKKEE FLSKISREGD LIHLENQRNG TLGSSLSAVS ARRLSDREIV VQISTFKVHE SPLSEVLLNL EEDGLLVINA
201: SSFESFGGRV FYNLHLQVLF LSIFFLISFS FSPLNFYSFI I
001: MCALVPSFFT NFGWPSTNQY ESYYGAGDNL NNGTFLELTV PQTYEVTHHQ NSLGVSVSSE GNEIDNNPVV VKKLNHNASE RDRRKKINTL FSSLRSCLPA
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN
Arabidopsis Description
ORG2Transcription factor ORG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1K1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.