Factsheet for Bra014658.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000495.1-P
Bra011972.1-P
Bra034392.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56980.1	Bra000495.1-P	AT2G28160.1	18268542
AT3G56980.1	Bra011972.1-P	AT2G28160.1	18268542
AT3G56980.1	Bra034392.1-P	AT2G28160.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76026	Canola	nucleus	98.79	98.79
Bra014654.1-P	Field mustard	nucleus	81.05	80.08
Bra014659.1-P	Field mustard	nucleus	81.05	78.52
Bra014657.1-P	Field mustard	nucleus	79.44	78.49
AT3G56980.1	Thale cress	nucleus	79.03	75.97
Bra014971.1-P	Field mustard	cytosol, nucleus, plastid	70.16	70.73
Bra007290.1-P	Field mustard	nucleus	68.55	68.27
Bra003261.1-P	Field mustard	mitochondrion	50.0	67.39
Bra014970.1-P	Field mustard	nucleus	66.53	66.53
Bra007289.1-P	Field mustard	nucleus	66.13	65.86
Bra003260.1-P	Field mustard	nucleus	65.32	65.06
Bra041013.1-P	Field mustard	nucleus	64.92	64.14
Bra016946.1-P	Field mustard	nucleus	55.24	57.56
Bra004609.1-P	Field mustard	nucleus	55.24	56.38
Bra014653.1-P	Field mustard	cytosol	49.19	54.46
KRG95137	Soybean	cytosol, nucleus, plastid	21.37	45.3
VIT_13s0047g00450.t01	Wine grape	nucleus	40.32	44.44
VIT_08s0007g05300.t01	Wine grape	nucleus	41.94	42.45
VIT_13s0073g00400.t01	Wine grape	extracellular, golgi, nucleus	39.92	41.08
KRH66814	Soybean	nucleus	39.92	41.08
KRH66812	Soybean	cytosol, nucleus, plastid	38.71	39.83
PGSC0003DMT400076759	Potato	nucleus	25.81	35.56
Zm00001d042062_P001	Maize	nucleus	31.05	34.68
Solyc10g079650.1.1	Tomato	nucleus	33.87	33.6
Solyc10g079680.1.1	Tomato	nucleus	25.81	33.16
Zm00001d011847_P001	Maize	nucleus	30.24	32.75
GSMUA_Achr8P22120_001	Banana	nucleus	31.05	32.08
TraesCS3B01G549700.1	Wheat	nucleus	27.02	32.06
TraesCS2B01G543800.1	Wheat	nucleus	32.26	32.0
GSMUA_AchrUn_...	Banana	nucleus	31.85	31.98
TraesCS3B01G550200.2	Wheat	nucleus	31.45	31.58
TraesCS2A01G515300.1	Wheat	nucleus	31.85	31.23
KXG34133	Sorghum	nucleus	30.65	31.15
TraesCS2B01G543700.1	Wheat	nucleus	30.65	31.15
HORVU2Hr1G114070.1	Barley	nucleus	31.45	30.83
TraesCS3D01G495700.1	Wheat	nucleus	30.65	30.77
TraesCS3A01G489700.1	Wheat	nucleus	30.65	30.77
TraesCS3D01G495400.1	Wheat	nucleus	29.44	30.67
HORVU3Hr1G108680.1	Barley	nucleus	30.24	30.49
PGSC0003DMT400076775	Potato	cytosol	12.9	30.48
TraesCS2D01G517000.1	Wheat	nucleus	31.05	30.43
Os01t0952800-01	Rice	nucleus	30.24	30.36
TraesCS3B01G549800.1	Wheat	nucleus	29.03	30.25
TraesCS3A01G489500.1	Wheat	nucleus	29.03	30.25
HORVU3Hr1G108670.2	Barley	nucleus	29.03	30.0
TraesCS3D01G495600.1	Wheat	nucleus	29.44	29.8
TraesCS3A01G489600.1	Wheat	nucleus	29.44	29.8
TraesCS3B01G550000.1	Wheat	nucleus	29.03	29.39
TraesCS3A01G489400.1	Wheat	nucleus	27.42	29.31
TraesCS3D01G495300.1	Wheat	nucleus	27.42	29.06
TraesCS7B01G321400.1	Wheat	nucleus	29.03	28.92
HORVU3Hr1G108660.1	Barley	nucleus	27.02	28.88
TraesCS7A01G421000.1	Wheat	nucleus	28.63	27.95
Solyc10g079660.1.1	Tomato	nucleus	39.52	14.06

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.6	MapMan:25.5.1.3	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra014658	EnsemblPlants:Bra014658.1
EnsemblPlants:Bra014658.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4DDT9
InterPro:MASH1/Ascl1a-like	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR13935	PANTHER:PTHR13935:SF41	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI00025445A6	InterPro:bHLH_dom	SEG:seg	:	:

Description

AT3G56970 (E=7e-098) BHLH038, ORG2 | BHLH038; DNA binding / transcription factor

Coordinates

chrA04:+:2078398..2079233

Molecular Weight (calculated)

27877.1 Da

IEP (calculated)

6.355

GRAVY (calculated)

-0.338

Length

248 amino acids

Sequence
(BLAST)

001: MCALVPPFFP NFGWPSTGEY ESYYLSGENL DNCTFFDFPV PETYGLVHQQ NSLGVSISSA GIGIDKSPVV NKKLKHNASE RDRRKKINSL FSSLRSCLPA
101: SDQSKKLSIP QTVSRSLKYI LELQEEVKML IQKKEELLVR VSGQRAIEQQ PKVVAHYVST VSATRLGDHE MMVQISSSKI NNFSISNVLS GLEDDGCVLV
201: DVSSSRSQGE RVFYTLHLQV DNIDNDKLNC TELSQRMLYL YEECGNSY

Best Arabidopsis Sequence Match ( AT3G56970.1 )
(BLAST)

001: MCALVPSFFT NFGWPSTNQY ESYYGAGDNL NNGTFLELTV PQTYEVTHHQ NSLGVSVSSE GNEIDNNPVV VKKLNHNASE RDRRKKINTL FSSLRSCLPA
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN

Arabidopsis Description

ORG2Transcription factor ORG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1K1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.