Factsheet for Bra014659.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000495.1-P
Bra011972.1-P
Bra034392.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56970.1	Bra000495.1-P	AT2G28160.1	18268542
AT3G56970.1	Bra011972.1-P	AT2G28160.1	18268542
AT3G56970.1	Bra034392.1-P	AT2G28160.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76025	Canola	nucleus	100.0	100.0
CDY47392	Canola	nucleus	100.0	100.0
CDY47394	Canola	nucleus	98.44	98.82
AT3G56970.1	Thale cress	nucleus	82.03	83.0
Bra014657.1-P	Field mustard	nucleus	79.69	81.27
Bra014658.1-P	Field mustard	nucleus	78.52	81.05
Bra014654.1-P	Field mustard	nucleus	75.78	77.29
Bra003261.1-P	Field mustard	mitochondrion	51.17	71.2
Bra014971.1-P	Field mustard	cytosol, nucleus, plastid	68.36	71.14
Bra007290.1-P	Field mustard	nucleus	69.14	71.08
Bra003260.1-P	Field mustard	nucleus	68.75	70.68
Bra007289.1-P	Field mustard	nucleus	67.58	69.48
Bra014970.1-P	Field mustard	nucleus	66.02	68.15
Bra041013.1-P	Field mustard	nucleus	64.84	66.14
Bra014653.1-P	Field mustard	cytosol	51.17	58.48
Bra016946.1-P	Field mustard	nucleus	53.91	57.98
Bra004609.1-P	Field mustard	nucleus	54.3	57.2
VIT_08s0007g05300.t01	Wine grape	nucleus	42.58	44.49
VIT_13s0047g00450.t01	Wine grape	nucleus	38.67	44.0
KRG95137	Soybean	cytosol, nucleus, plastid	19.92	43.59
VIT_13s0073g00400.t01	Wine grape	extracellular, golgi, nucleus	39.45	41.91
KRH66814	Soybean	nucleus	38.67	41.08
KRH66812	Soybean	cytosol, nucleus, plastid	37.11	39.42
PGSC0003DMT400076759	Potato	nucleus	25.39	36.11
Solyc10g079680.1.1	Tomato	nucleus	26.56	35.23
Zm00001d042062_P001	Maize	nucleus	29.69	34.23
GSMUA_Achr8P22120_001	Banana	nucleus	31.64	33.75
Solyc10g079650.1.1	Tomato	nucleus	32.03	32.8
Zm00001d011847_P001	Maize	nucleus	29.3	32.75
TraesCS3B01G549700.1	Wheat	nucleus	26.56	32.54
TraesCS2B01G543800.1	Wheat	nucleus	31.64	32.4
GSMUA_AchrUn_...	Banana	nucleus	31.25	32.39
TraesCS2B01G543700.1	Wheat	nucleus	30.86	32.38
TraesCS2A01G515300.1	Wheat	nucleus	31.64	32.02
TraesCS3D01G495700.1	Wheat	nucleus	30.47	31.58
TraesCS3B01G550200.2	Wheat	nucleus	30.47	31.58
PGSC0003DMT400076775	Potato	cytosol	12.89	31.43
HORVU2Hr1G114070.1	Barley	nucleus	30.86	31.23
TraesCS2D01G517000.1	Wheat	nucleus	30.86	31.23
TraesCS3A01G489700.1	Wheat	nucleus	30.08	31.17
KXG34133	Sorghum	nucleus	29.69	31.15
HORVU3Hr1G108680.1	Barley	nucleus	29.69	30.89
TraesCS3D01G495400.1	Wheat	nucleus	28.52	30.67
HORVU3Hr1G108670.2	Barley	nucleus	28.52	30.42
Os01t0952800-01	Rice	nucleus	29.3	30.36
TraesCS3B01G549800.1	Wheat	nucleus	27.73	29.83
TraesCS3A01G489500.1	Wheat	nucleus	27.73	29.83
TraesCS3A01G489600.1	Wheat	nucleus	28.52	29.8
TraesCS3D01G495600.1	Wheat	nucleus	28.52	29.8
HORVU3Hr1G108660.1	Barley	nucleus	26.95	29.74
TraesCS7B01G321400.1	Wheat	nucleus	28.91	29.72
TraesCS3B01G550000.1	Wheat	nucleus	28.12	29.39
TraesCS3A01G489400.1	Wheat	nucleus	26.56	29.31
TraesCS7A01G421000.1	Wheat	nucleus	28.91	29.13
TraesCS3D01G495300.1	Wheat	nucleus	26.17	28.63
Solyc10g079660.1.1	Tomato	nucleus	36.33	13.34

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.6	MapMan:25.5.1.3	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra014659	EnsemblPlants:Bra014659.1
EnsemblPlants:Bra014659.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0006139	GO:GO:0006357	GO:GO:0006950
GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009987
GO:GO:0009991	GO:GO:0010106	GO:GO:0019725	GO:GO:0046983	GO:GO:0055072	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M4DDU0	InterPro:MASH1/Ascl1a-like	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR13935	PANTHER:PTHR13935:SF41	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000254476B	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

AT3G56970 (E=2e-095) BHLH038, ORG2 | BHLH038; DNA binding / transcription factor

Coordinates

chrA04:+:2080953..2082111

Molecular Weight (calculated)

29035.4 Da

IEP (calculated)

5.711

GRAVY (calculated)

-0.446

Length

256 amino acids

Sequence
(BLAST)

001: MCALVPPLFP DFGWPSTAGY ERSYYLGGEN LNNDMFLDFP VLETYGVLAH HQNSLGVSVS SEGNGIDNNP VVKKKLNHNA SERDRRKKIN SLFASLRSCL
101: PTSDQSKKLS ISATVSRSLK YIPELQEQVK KLLQKKEELL VRVSGQRDIE LYVKPQPKTV ASYVSTVSAT RLGDNEVMVQ ISSSKINNFS ISNVLTGLEE
201: DDFVLVDVSS SRSQGERLFY TLHLQVENMD DHYKMNCEEL SERMLYLYEE CENSFR

Best Arabidopsis Sequence Match ( AT3G56970.1 )
(BLAST)

001: MCALVPSFFT NFGWPSTNQY ESYYGAGDNL NNGTFLELTV PQTYEVTHHQ NSLGVSVSSE GNEIDNNPVV VKKLNHNASE RDRRKKINTL FSSLRSCLPA
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN

Arabidopsis Description

ORG2Transcription factor ORG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1K1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.