Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400048941 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56970.1 | PGSC0003DMT400048941 | AT2G28160.1 | 18268542 |
| AT3G56980.1 | PGSC0003DMT400048941 | AT2G28160.1 | 18268542 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g079680.1.1 | Tomato | nucleus | 73.33 | 68.39 |
| VIT_13s0047g00450.t01 | Wine grape | nucleus | 43.33 | 34.67 |
| VIT_08s0007g05300.t01 | Wine grape | nucleus | 46.67 | 34.29 |
| CDY23861 | Canola | cytosol, plastid | 25.56 | 32.86 |
| Bra003261.1-P | Field mustard | mitochondrion | 32.78 | 32.07 |
| VIT_13s0073g00400.t01 | Wine grape | extracellular, golgi, nucleus | 42.78 | 31.95 |
| KRG95137 | Soybean | cytosol, nucleus, plastid | 20.0 | 30.77 |
| KRH66812 | Soybean | cytosol, nucleus, plastid | 38.33 | 28.63 |
| KRH66814 | Soybean | nucleus | 37.78 | 28.22 |
| CDY06938 | Canola | nucleus | 37.22 | 28.15 |
| Bra016946.1-P | Field mustard | nucleus | 37.22 | 28.15 |
| CDY14758 | Canola | nucleus | 37.22 | 28.15 |
| CDX72086 | Canola | nucleus | 36.11 | 27.54 |
| AT2G41240.1 | Thale cress | nucleus | 36.67 | 27.27 |
| Bra004609.1-P | Field mustard | nucleus | 36.11 | 26.75 |
| CDY68089 | Canola | nucleus | 37.22 | 26.69 |
| Zm00001d042062_P001 | Maize | nucleus | 32.78 | 26.58 |
| AT5G04150.1 | Thale cress | nucleus | 38.33 | 26.54 |
| Bra007290.1-P | Field mustard | nucleus | 36.67 | 26.51 |
| CDX85121 | Canola | nucleus | 36.11 | 26.42 |
| CDX97997 | Canola | nucleus | 35.56 | 26.34 |
| CDY72354 | Canola | nucleus | 35.56 | 26.34 |
| Bra014657.1-P | Field mustard | nucleus | 36.67 | 26.29 |
| CDY69684 | Canola | nucleus | 36.67 | 26.29 |
| CDY06148 | Canola | nucleus | 36.11 | 26.1 |
| CDX67670 | Canola | nucleus | 36.11 | 26.1 |
| CDY71388 | Canola | cytosol | 36.11 | 25.9 |
| CDX76026 | Canola | nucleus | 35.56 | 25.81 |
| Bra014658.1-P | Field mustard | nucleus | 35.56 | 25.81 |
| Bra003260.1-P | Field mustard | nucleus | 35.56 | 25.7 |
| CDX77489 | Canola | cytosol, nucleus, plastid | 35.0 | 25.61 |
| CDX72085 | Canola | nucleus | 35.56 | 25.5 |
| CDY47394 | Canola | nucleus | 36.11 | 25.49 |
| CDY71118 | Canola | nucleus | 35.0 | 25.4 |
| CDX76025 | Canola | nucleus | 36.11 | 25.39 |
| Bra014659.1-P | Field mustard | nucleus | 36.11 | 25.39 |
| CDY47392 | Canola | nucleus | 36.11 | 25.39 |
| CDY06149 | Canola | nucleus | 35.0 | 25.3 |
| Bra007289.1-P | Field mustard | nucleus | 35.0 | 25.3 |
| AT3G56970.1 | Thale cress | nucleus | 35.56 | 25.3 |
| Bra014971.1-P | Field mustard | cytosol, nucleus, plastid | 34.44 | 25.2 |
| AT3G56980.1 | Thale cress | nucleus | 36.11 | 25.19 |
| CDY06147 | Canola | nucleus | 35.0 | 25.1 |
| Bra041013.1-P | Field mustard | nucleus | 35.0 | 25.1 |
| CDX77490 | Canola | nucleus | 34.44 | 25.0 |
| GSMUA_Achr8P22120_001 | Banana | nucleus | 33.33 | 25.0 |
| CDX67671 | Canola | nucleus | 34.44 | 24.9 |
| Zm00001d011847_P001 | Maize | nucleus | 31.67 | 24.89 |
| CDY47395 | Canola | nucleus | 30.56 | 24.89 |
| Bra014654.1-P | Field mustard | nucleus | 34.44 | 24.7 |
| CDX76031 | Canola | nucleus | 34.44 | 24.7 |
| Bra014970.1-P | Field mustard | nucleus | 33.89 | 24.6 |
| TraesCS3B01G549700.1 | Wheat | nucleus | 28.33 | 24.4 |
| TraesCS2B01G543700.1 | Wheat | nucleus | 32.78 | 24.18 |
| KXG34133 | Sorghum | nucleus | 32.22 | 23.77 |
| TraesCS2A01G515300.1 | Wheat | nucleus | 33.33 | 23.72 |
| HORVU3Hr1G108660.1 | Barley | nucleus | 30.56 | 23.71 |
| Bra014653.1-P | Field mustard | cytosol | 29.44 | 23.66 |
| CDX76032 | Canola | cytosol | 29.44 | 23.66 |
| TraesCS2B01G543800.1 | Wheat | nucleus | 32.78 | 23.6 |
| TraesCS3D01G495400.1 | Wheat | nucleus | 31.11 | 23.53 |
| TraesCS3B01G549800.1 | Wheat | nucleus | 31.11 | 23.53 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.22 | 23.48 |
| HORVU2Hr1G114070.1 | Barley | nucleus | 32.78 | 23.32 |
| TraesCS2D01G517000.1 | Wheat | nucleus | 32.78 | 23.32 |
| TraesCS3A01G489500.1 | Wheat | nucleus | 30.56 | 23.11 |
| TraesCS3A01G489700.1 | Wheat | nucleus | 31.67 | 23.08 |
| TraesCS3B01G550200.2 | Wheat | nucleus | 31.67 | 23.08 |
| TraesCS3D01G495700.1 | Wheat | nucleus | 31.67 | 23.08 |
| HORVU3Hr1G108670.2 | Barley | nucleus | 30.56 | 22.92 |
| PGSC0003DMT400076775 | Potato | cytosol | 13.33 | 22.86 |
| TraesCS3D01G495600.1 | Wheat | nucleus | 31.11 | 22.86 |
| CDX76027 | Canola | nucleus | 28.89 | 22.61 |
| TraesCS7B01G321400.1 | Wheat | nucleus | 31.11 | 22.49 |
| TraesCS3B01G550000.1 | Wheat | nucleus | 30.56 | 22.45 |
| TraesCS3A01G489400.1 | Wheat | nucleus | 28.89 | 22.41 |
| HORVU3Hr1G108680.1 | Barley | nucleus | 30.56 | 22.36 |
| TraesCS3D01G495300.1 | Wheat | nucleus | 28.89 | 22.22 |
| TraesCS7A01G421000.1 | Wheat | nucleus | 31.11 | 22.05 |
| TraesCS3A01G489600.1 | Wheat | nucleus | 30.0 | 22.04 |
| CDY47396 | Canola | mitochondrion | 36.11 | 22.03 |
| Os01t0952800-01 | Rice | nucleus | 29.44 | 21.46 |
| CDX80905 | Canola | nucleus | 38.33 | 17.74 |
| CDX76023 | Canola | cytosol | 1.11 | 7.14 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.6 | MapMan:25.5.1.3 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M1CXD0 | InterPro:MASH1/Ascl1a-like | PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400029853 |
| PGSC:PGSC0003DMG400029853 | EnsemblPlants:PGSC0003DMT400076759 | PFscan:PS50888 | PANTHER:PTHR13935 | PANTHER:PTHR13935:SF41 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002958FEB | InterPro:bHLH_dom | SEG:seg | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400029853]
Coordinates
chr10:-:58129858..58131330
Molecular Weight (calculated)
20753.0 Da
IEP (calculated)
10.090
GRAVY (calculated)
-0.468
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKLNHNAS ERNRRKKMNF LYSTLRSLLP PTNKHQKKKL SFPATVSYVQ EYIPELKKEI ERLSKTKDLL LSKKSNYSLL QIDEYKRKLF MGGTSNSSTT
101: SICASQLSNG QVLVQISTTQ ENDFTISQVF ASLEEDGLIL LNASSFKSFG DNVFRSLHFQ VYLYISLYGC LDIKNVKFER
101: SICASQLSNG QVLVQISTTQ ENDFTISQVF ASLEEDGLIL LNASSFKSFG DNVFRSLHFQ VYLYISLYGC LDIKNVKFER
001: MCALVPSFFT NFGWPSTNQY ESYYGAGDNL NNGTFLELTV PQTYEVTHHQ NSLGVSVSSE GNEIDNNPVV VKKLNHNASE RDRRKKINTL FSSLRSCLPA
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN
Arabidopsis Description
ORG2Transcription factor ORG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1K1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.