Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G281200.1 | |
| TraesCS2B01G298600.1 | |
| TraesCS2D01G280100.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G489700.1 | Wheat | nucleus | 94.33 | 94.33 |
| TraesCS3D01G495700.1 | Wheat | nucleus | 93.93 | 93.93 |
| HORVU3Hr1G108680.1 | Barley | nucleus | 88.26 | 88.62 |
| TraesCS3B01G550000.1 | Wheat | nucleus | 77.73 | 78.37 |
| TraesCS3B01G549800.1 | Wheat | nucleus | 74.9 | 77.73 |
| TraesCS3B01G549700.1 | Wheat | nucleus | 61.13 | 72.25 |
| Zm00001d042062_P001 | Maize | nucleus | 54.66 | 60.81 |
| KXG34133 | Sorghum | nucleus | 59.92 | 60.66 |
| Os01t0952800-01 | Rice | nucleus | 59.11 | 59.11 |
| Zm00001d011847_P001 | Maize | nucleus | 54.25 | 58.52 |
| TraesCS2B01G543700.1 | Wheat | nucleus | 53.85 | 54.51 |
| TraesCS2B01G543800.1 | Wheat | nucleus | 53.44 | 52.8 |
| TraesCS7B01G321400.1 | Wheat | nucleus | 51.42 | 51.0 |
| KRG95137 | Soybean | cytosol, nucleus, plastid | 18.62 | 39.32 |
| GSMUA_Achr8P22120_001 | Banana | nucleus | 35.22 | 36.25 |
| VIT_13s0047g00450.t01 | Wine grape | nucleus | 32.79 | 36.0 |
| VIT_08s0007g05300.t01 | Wine grape | nucleus | 35.22 | 35.51 |
| CDY23861 | Canola | cytosol, plastid | 19.84 | 35.0 |
| KRH66814 | Soybean | nucleus | 34.01 | 34.85 |
| KRH66812 | Soybean | cytosol, nucleus, plastid | 33.2 | 34.02 |
| VIT_13s0073g00400.t01 | Wine grape | extracellular, golgi, nucleus | 32.79 | 33.61 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.6 | 33.6 |
| Bra003261.1-P | Field mustard | mitochondrion | 24.29 | 32.61 |
| PGSC0003DMT400076759 | Potato | nucleus | 23.08 | 31.67 |
| CDY69684 | Canola | nucleus | 31.98 | 31.47 |
| Bra014658.1-P | Field mustard | nucleus | 31.58 | 31.45 |
| CDX76026 | Canola | nucleus | 31.58 | 31.45 |
| CDY68089 | Canola | nucleus | 31.58 | 31.08 |
| Bra014657.1-P | Field mustard | nucleus | 31.58 | 31.08 |
| CDX76031 | Canola | nucleus | 31.17 | 30.68 |
| Bra014654.1-P | Field mustard | nucleus | 31.17 | 30.68 |
| CDY47394 | Canola | nucleus | 31.58 | 30.59 |
| CDX76025 | Canola | nucleus | 31.58 | 30.47 |
| Bra014659.1-P | Field mustard | nucleus | 31.58 | 30.47 |
| CDY47392 | Canola | nucleus | 31.58 | 30.47 |
| CDY14758 | Canola | nucleus | 29.15 | 30.25 |
| AT3G56980.1 | Thale cress | nucleus | 31.58 | 30.23 |
| AT3G56970.1 | Thale cress | nucleus | 30.77 | 30.04 |
| CDY47395 | Canola | nucleus | 26.72 | 29.86 |
| Bra016946.1-P | Field mustard | nucleus | 28.34 | 29.41 |
| CDX72086 | Canola | nucleus | 27.94 | 29.24 |
| CDY06938 | Canola | nucleus | 27.94 | 28.99 |
| Bra007290.1-P | Field mustard | nucleus | 29.15 | 28.92 |
| CDX85121 | Canola | nucleus | 28.74 | 28.86 |
| Solyc10g079650.1.1 | Tomato | nucleus | 29.15 | 28.8 |
| CDY06148 | Canola | nucleus | 28.74 | 28.51 |
| CDX67670 | Canola | nucleus | 28.74 | 28.51 |
| Solyc10g079680.1.1 | Tomato | nucleus | 22.27 | 28.5 |
| Bra004609.1-P | Field mustard | nucleus | 27.94 | 28.4 |
| Bra003260.1-P | Field mustard | nucleus | 28.34 | 28.11 |
| AT2G41240.1 | Thale cress | nucleus | 27.53 | 28.1 |
| CDX77489 | Canola | cytosol, nucleus, plastid | 27.94 | 28.05 |
| Bra014971.1-P | Field mustard | cytosol, nucleus, plastid | 27.94 | 28.05 |
| CDX67671 | Canola | nucleus | 27.94 | 27.71 |
| CDX97997 | Canola | nucleus | 27.13 | 27.57 |
| CDY72354 | Canola | nucleus | 27.13 | 27.57 |
| CDX77490 | Canola | nucleus | 27.53 | 27.42 |
| CDY71118 | Canola | nucleus | 27.53 | 27.42 |
| Bra014970.1-P | Field mustard | nucleus | 27.53 | 27.42 |
| AT5G04150.1 | Thale cress | nucleus | 28.74 | 27.31 |
| CDX72085 | Canola | nucleus | 27.13 | 26.69 |
| PGSC0003DMT400076775 | Potato | cytosol | 11.34 | 26.67 |
| CDX76027 | Canola | nucleus | 24.29 | 26.09 |
| Bra041013.1-P | Field mustard | nucleus | 26.32 | 25.9 |
| CDY06147 | Canola | nucleus | 26.32 | 25.9 |
| CDY71388 | Canola | cytosol | 25.91 | 25.5 |
| CDY47396 | Canola | mitochondrion | 29.55 | 24.75 |
| Bra014653.1-P | Field mustard | cytosol | 22.27 | 24.55 |
| CDX76032 | Canola | cytosol | 22.27 | 24.55 |
| Bra007289.1-P | Field mustard | nucleus | 24.7 | 24.5 |
| CDY06149 | Canola | nucleus | 24.7 | 24.5 |
| CDX80905 | Canola | nucleus | 26.32 | 16.71 |
| Solyc10g079660.1.1 | Tomato | nucleus | 32.79 | 11.62 |
| CDX76023 | Canola | cytosol | 0.4 | 3.57 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.6 | MapMan:25.5.1.3 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MASH1/Ascl1a-like | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR13935 |
| PANTHER:PTHR13935:SF41 | SMART:SM00353 | SUPFAM:SSF47459 | EnsemblPlantsGene:TraesCS3B01G550200 | EnsemblPlants:TraesCS3B01G550200.2 | InterPro:bHLH_dom |
| TIGR:cd00083 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:785280738..785283955
Molecular Weight (calculated)
27216.4 Da
IEP (calculated)
7.685
GRAVY (calculated)
-0.502
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHQHQMFED PFASSISSLE AEIFSVAGGH HHTQWPGLDH DIPLAPAANN GTSSGGYGSP GGGDGSGSHR KISHNAYERD RRKQLNELYS DLRSLLPDTD
101: HTKKLSIPIT VSRVLKYIPE LQKQVDGLEK KKEELTRASC KPGVLTMKGN TAPIVSATCL DDREIMVQVS LVSTMAGVLP MSKCIKVLEN EGLRLISSST
201: SAFQNRTFYS LHLQRTQRTM SKECPAFCEE LENALTQNAG LRLHHHQ
101: HTKKLSIPIT VSRVLKYIPE LQKQVDGLEK KKEELTRASC KPGVLTMKGN TAPIVSATCL DDREIMVQVS LVSTMAGVLP MSKCIKVLEN EGLRLISSST
201: SAFQNRTFYS LHLQRTQRTM SKECPAFCEE LENALTQNAG LRLHHHQ
001: MCTLTPMFPS KQQEWYSAST MEYPWLQSQV HSFSPTLHFP SFLHPLDDSK SHNINLHHMS LSHSNNTNSN NNNYQEEDRG AVVLEKKLNH NASERDRRRK
101: LNALYSSLRA LLPLSDQKRK LSIPMTVARV VKYIPEQKQE LQRLSRRKEE LLKRISRKTH QEQLRNKAMM DSIDSSSSQR IAANWLTDTE IAVQIATSKW
201: TSVSDMLLRL EENGLNVISV SSSVSSTARI FYTLHLQMRG DCKVRLEELI NGMLLGLRQS
101: LNALYSSLRA LLPLSDQKRK LSIPMTVARV VKYIPEQKQE LQRLSRRKEE LLKRISRKTH QEQLRNKAMM DSIDSSSSQR IAANWLTDTE IAVQIATSKW
201: TSVSDMLLRL EENGLNVISV SSSVSSTARI FYTLHLQMRG DCKVRLEELI NGMLLGLRQS
Arabidopsis Description
BHLH101basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT5G04150]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.