Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G281200.1 | Wheat | nucleus | 97.08 | 98.52 |
| TraesCS2D01G280100.1 | Wheat | nucleus | 97.08 | 98.23 |
| HORVU2Hr1G068960.2 | Barley | nucleus | 76.09 | 85.29 |
| KXG26070 | Sorghum | nucleus | 62.68 | 58.74 |
| Zm00001d004007_P001 | Maize | nucleus | 58.31 | 55.87 |
| Os04t0381700-00 | Rice | nucleus | 57.14 | 55.68 |
| Zm00001d025205_P001 | Maize | nucleus | 61.22 | 55.12 |
| GSMUA_Achr6P27600_001 | Banana | nucleus | 38.78 | 43.75 |
| KRH22827 | Soybean | nucleus | 30.32 | 32.2 |
| Bra000495.1-P | Field mustard | nucleus | 28.57 | 31.82 |
| KRH26533 | Soybean | nucleus | 29.74 | 31.68 |
| CDY31199 | Canola | nucleus | 28.86 | 31.63 |
| AT2G28160.1 | Thale cress | nucleus | 29.15 | 31.45 |
| CDY04543 | Canola | nucleus | 28.86 | 31.33 |
| CDX83286 | Canola | nucleus | 28.28 | 30.99 |
| Solyc06g051550.2.1 | Tomato | cytosol | 27.41 | 30.92 |
| KRH30560 | Soybean | nucleus | 27.99 | 30.77 |
| PGSC0003DMT400048941 | Potato | nucleus | 27.99 | 30.77 |
| CDX71377 | Canola | nucleus | 28.28 | 30.7 |
| Bra011972.1-P | Field mustard | nucleus | 28.28 | 30.7 |
| KRH25108 | Soybean | nucleus | 25.36 | 30.53 |
| VIT_06s0061g00720.t01 | Wine grape | nucleus | 27.41 | 29.94 |
| CDY30505 | Canola | nucleus | 26.53 | 28.98 |
| Bra034392.1-P | Field mustard | nucleus | 26.53 | 28.8 |
| CDX77160 | Canola | nucleus | 26.53 | 28.8 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 18.08 | 23.4 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 16.33 | 20.44 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 15.16 | 20.31 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 16.33 | 20.14 |
| TraesCS4B01G331900.1 | Wheat | nucleus | 14.29 | 16.07 |
| TraesCS4B01G332000.1 | Wheat | nucleus | 15.74 | 15.56 |
| TraesCS7B01G465400.1 | Wheat | nucleus | 13.99 | 13.79 |
| TraesCS3B01G070400.1 | Wheat | nucleus | 11.66 | 13.11 |
| TraesCS3B01G476000.1 | Wheat | nucleus | 13.99 | 12.66 |
| TraesCS6B01G095600.1 | Wheat | nucleus | 18.08 | 11.21 |
| TraesCS4B01G051500.2 | Wheat | nucleus | 15.74 | 10.91 |
| TraesCS6B01G095700.1 | Wheat | nucleus | 17.2 | 10.67 |
| TraesCS7B01G211600.1 | Wheat | nucleus | 16.04 | 10.46 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G298600.1 | EnsemblPlantsGene:TraesCS2B01G298600 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF17 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.5 | : | : |
Description
No Description!
Coordinates
chr2B:-:418276881..418278342
Molecular Weight (calculated)
37044.4 Da
IEP (calculated)
5.441
GRAVY (calculated)
-0.545
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHHQRLLHL SPHQEHLMIG PGFFDVDPMH FHGDDGGFAV QPAAAVVDDG AWMEDLMHLG DELFGGGGGG GGAGDDNDMV GAAADQAWRQ ECEGASPDDH
101: PCSYDDVISP VSGEQGAGFE PSRDDSDLSG TRKRRDRSKT IVSERKRRFR MKEKLYELRA LVPNITKMDK ASIIADAVAY VKNLQSHARK LKEDVATLEA
201: RPGLAGRRQQ QQQQQKQGRR QGQHGRNGGD DEGNSGSSRG GGGARVTLVS AAQVGEGRFF VTVECERRDG VAAPLCAAVE SLAGFLVESS NLGCSSDRVV
301: STLTLKVSEA REEVMISDRT VKLWVMAALL SEGFRPEATS EIC
101: PCSYDDVISP VSGEQGAGFE PSRDDSDLSG TRKRRDRSKT IVSERKRRFR MKEKLYELRA LVPNITKMDK ASIIADAVAY VKNLQSHARK LKEDVATLEA
201: RPGLAGRRQQ QQQQQKQGRR QGQHGRNGGD DEGNSGSSRG GGGARVTLVS AAQVGEGRFF VTVECERRDG VAAPLCAAVE SLAGFLVESS NLGCSSDRVV
301: STLTLKVSEA REEVMISDRT VKLWVMAALL SEGFRPEATS EIC
001: MEGRVNALSN INDLELHNFL VDPNFDQFIN LIRGDHQTID ENPVLDFDLG PLQNSPCFID ENQFIPTPVD DLFDELPDLD SNVAESFRSF DGDSVRAGGE
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT
Arabidopsis Description
FITTranscription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Source:UniProtKB/Swiss-Prot;Acc:Q0V7X4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.