Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G069300.1 | Wheat | nucleus | 96.2 | 95.51 |
| TraesCS6A01G071200.1 | Wheat | nucleus | 95.12 | 94.95 |
| TraesCS6B01G095700.1 | Wheat | nucleus | 93.67 | 93.67 |
| HORVU6Hr1G012730.1 | Barley | nucleus | 92.95 | 92.11 |
| HORVU6Hr1G012760.1 | Barley | nucleus | 92.95 | 92.11 |
| Os02t0120500-01 | Rice | nucleus | 60.4 | 60.51 |
| KXG29315 | Sorghum | nucleus | 60.76 | 58.84 |
| Zm00001d053895_P001 | Maize | nucleus | 61.3 | 54.24 |
| GSMUA_Achr1P07450_001 | Banana | nucleus, plastid | 21.88 | 41.3 |
| GSMUA_Achr3P00640_001 | Banana | nucleus | 20.8 | 38.59 |
| GSMUA_Achr1P07330_001 | Banana | nucleus | 24.95 | 32.7 |
| CDY31399 | Canola | nucleus | 32.37 | 31.57 |
| KRH36073 | Soybean | nucleus | 32.55 | 31.52 |
| Bra002004.1-P | Field mustard | nucleus | 32.19 | 31.39 |
| AT2G16910.1 | Thale cress | nucleus | 32.19 | 31.17 |
| CDY02227 | Canola | nucleus | 31.83 | 30.99 |
| Bra013041.1-P | Field mustard | nucleus | 31.83 | 30.99 |
| CDX71316 | Canola | nucleus | 31.83 | 30.99 |
| VIT_01s0127g00860.t01 | Wine grape | nucleus | 34.0 | 30.72 |
| KRG90676 | Soybean | extracellular, vacuole | 32.01 | 30.68 |
| CDX89760 | Canola | nucleus | 31.28 | 30.46 |
| Solyc08g062780.1.1 | Tomato | nucleus | 32.73 | 30.37 |
| PGSC0003DMT400021165 | Potato | nucleus | 23.33 | 29.66 |
| VIT_03s0038g02540.t01 | Wine grape | nucleus | 34.54 | 29.43 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 12.12 | 24.1 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 10.49 | 22.66 |
| TraesCS7B01G465400.1 | Wheat | nucleus | 13.92 | 22.13 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 10.67 | 21.53 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 9.95 | 20.75 |
| TraesCS4B01G331900.1 | Wheat | nucleus | 11.39 | 20.66 |
| TraesCS3B01G476000.1 | Wheat | nucleus | 13.92 | 20.32 |
| TraesCS4B01G332000.1 | Wheat | nucleus | 12.3 | 19.6 |
| TraesCS3B01G070400.1 | Wheat | nucleus | 10.31 | 18.69 |
| TraesCS2B01G298600.1 | Wheat | nucleus | 11.21 | 18.08 |
| TraesCS7B01G211600.1 | Wheat | nucleus | 16.82 | 17.68 |
| TraesCS4B01G051500.2 | Wheat | nucleus | 15.19 | 16.97 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G095600.1 | EnsemblPlantsGene:TraesCS6B01G095600 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF11 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr6B:-:71705696..71708698
Molecular Weight (calculated)
58909.5 Da
IEP (calculated)
4.414
GRAVY (calculated)
-0.513
Length
553 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGDYHQQS LNGGAAVHGH GGGGGGTVEA ALRPLVGGSH GWDYCIYWRL SPDQRFLEMA GFCCSAEFEA QVATLADVPC SIPLDSSSVG MHAQALLSNQ
101: PIWQSSGGSP GPDLLTGYEA ASSGGEKTRL LVPVAGGIVE LFASRYMAEE QQMAELVMAQ CGGGGQGWQE TEAQGFAWDA AAADPGRLYA AASLNLFDGA
201: GGSGSGEPFL AGVQEDGAAG VGWQYAAESS EPPSTVAQEH QQLHGSGVGR ADSGSEGSDM QLGDPDDEVD GETQRGSGKD GCGKRQQCKN LEAERKRRKK
301: LNERLYKLRS LVPNITKMDR ASILGDAIDY IVGLQKQVKD LQDELEDPNL PGITGGDSKA PDVLLDDHPP PGLDNDEDSP QQQPFPSAGG KRLRKEEAGD
401: EEEKEAEDQD MEPQVEVRQV EGKEFFLQVL CSHKSGRFVR IMDEIAALGL QITSINVTSY NKLVLNVFRA VMKDNEAAVP ADRVRDSLLE VTREMYSGGG
501: TWSSPVPPPP PTNAKLDGMD GQAVPAAAGD HYQLHHQVLG GYHHQHLQYL AMD
101: PIWQSSGGSP GPDLLTGYEA ASSGGEKTRL LVPVAGGIVE LFASRYMAEE QQMAELVMAQ CGGGGQGWQE TEAQGFAWDA AAADPGRLYA AASLNLFDGA
201: GGSGSGEPFL AGVQEDGAAG VGWQYAAESS EPPSTVAQEH QQLHGSGVGR ADSGSEGSDM QLGDPDDEVD GETQRGSGKD GCGKRQQCKN LEAERKRRKK
301: LNERLYKLRS LVPNITKMDR ASILGDAIDY IVGLQKQVKD LQDELEDPNL PGITGGDSKA PDVLLDDHPP PGLDNDEDSP QQQPFPSAGG KRLRKEEAGD
401: EEEKEAEDQD MEPQVEVRQV EGKEFFLQVL CSHKSGRFVR IMDEIAALGL QITSINVTSY NKLVLNVFRA VMKDNEAAVP ADRVRDSLLE VTREMYSGGG
501: TWSSPVPPPP PTNAKLDGMD GQAVPAAAGD HYQLHHQVLG GYHHQHLQYL AMD
001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q
Arabidopsis Description
AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.