CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02227	Canola	nucleus	97.01	97.01
CDY31399	Canola	nucleus	89.08	89.24
CDX71316	Canola	nucleus	88.03	88.03
AT2G16910.1	Thale cress	nucleus	88.03	87.57
VIT_01s0127g00860.t01	Wine grape	nucleus	48.77	45.26
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	22.18	43.0
VIT_03s0038g02540.t01	Wine grape	nucleus	48.06	42.06
KRH36073	Soybean	nucleus	41.37	41.16
GSMUA_Achr3P00640_001	Banana	nucleus	20.6	39.26
KRG90676	Soybean	extracellular, vacuole	39.79	39.17
Solyc08g062780.1.1	Tomato	nucleus	40.85	38.93
PGSC0003DMT400021165	Potato	nucleus	28.7	37.47
CDY19416	Canola	nucleus	11.97	36.76
CDX98033	Canola	nucleus	11.97	36.76
CDY54227	Canola	nucleus	22.71	33.95
Os02t0120500-01	Rice	nucleus	31.69	32.61
TraesCS6B01G095700.1	Wheat	nucleus	30.99	31.83
TraesCS6A01G071300.1	Wheat	nucleus	30.81	31.82
CDY34878	Canola	cytosol	21.48	31.77
TraesCS6D01G069400.1	Wheat	nucleus	30.81	31.59
CDX93399	Canola	nucleus	22.71	31.46
HORVU6Hr1G012760.1	Barley	nucleus	30.81	31.36
HORVU6Hr1G012730.1	Barley	nucleus	30.81	31.36
TraesCS6B01G095600.1	Wheat	nucleus	30.46	31.28
CDY37964	Canola	nucleus	22.36	31.28
GSMUA_Achr1P07330_001	Banana	nucleus	23.24	31.28
TraesCS6D01G069300.1	Wheat	nucleus	30.63	31.24
TraesCS6A01G071200.1	Wheat	nucleus	30.11	30.87
KXG29315	Sorghum	nucleus	30.99	30.82
Zm00001d053895_P001	Maize	nucleus	29.75	27.04
CDY38270	Canola	nucleus	11.27	26.02
CDY42237	Canola	nucleus	10.92	25.62
CDY47924	Canola	nucleus	10.92	25.2
CDX88610	Canola	nucleus	10.39	23.98
CDX97027	Canola	nucleus	12.32	23.49
CDY69978	Canola	nucleus	14.79	23.46
CDY08769	Canola	nucleus	14.79	23.4
CDY30182	Canola	nucleus	10.04	23.36
CDY37835	Canola	nucleus	14.61	23.18
CDY11882	Canola	nucleus	10.04	23.17
CDY52738	Canola	cytosol	6.69	23.03
CDX69821	Canola	nucleus	11.97	22.44
CDY46719	Canola	nucleus	10.39	22.35
CDY43542	Canola	nucleus	10.21	22.05
CDX68608	Canola	nucleus	10.04	21.67
CDY30505	Canola	nucleus	11.97	21.66
CDY04543	Canola	nucleus	11.97	21.52
CDX77160	Canola	nucleus	11.97	21.52
CDX71377	Canola	nucleus	11.97	21.52
CDY31199	Canola	nucleus	11.8	21.41
CDX83286	Canola	nucleus	11.62	21.09
CDX99537	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	7.22	20.3
CDY21073	Canola	nucleus	15.32	20.19
CDX97028	Canola	cytosol, plastid, vacuole	3.52	20.0
CDY28529	Canola	nucleus	15.32	19.82
CDY34601	Canola	nucleus	15.32	19.59
CDY48974	Canola	nucleus	15.85	18.79
CDY03557	Canola	cytosol, nucleus, plastid	4.4	15.82

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078DKQ8	EnsemblPlants:CDX89760	ProteinID:CDX89760	ProteinID:CDX89760.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00150198001
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215
PFscan:PS50888	PANTHER:PTHR31945	PANTHER:PTHR31945:SF11	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EE3610
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BnaC03g46740D

Coordinates

chrLK031860:+:1521122..1523754

Molecular Weight (calculated)

64608.7 Da

IEP (calculated)

5.085

GRAVY (calculated)

-0.770

Length

568 amino acids

Sequence
(BLAST)

001: MESNMQNLLE KLRPLVGARA WDYCVLWSLN EDQRFVKWMG CCCGGTQLIE EAGTEEFSFG GCRDVMFHHP RTKSCEFLAH LPSSISLDSG IYAETLLTNQ
101: TGWLTESSGP GFMQETICTR VLVPIPRGLV ELFAARHVAE DQNVVDFVMG HCNMLMDETV RINMMAGDKV ESKPYGMLLP GDIYQKGSSK DEEMMNLPSP
201: YDISADQIRL NFLPQMNDYE SQQHLKMKSD YDHHHQTLGY DLPENGNNMN PFNTVAEEGM SVMGEASLLV NEQQVGNDKE MNENATGSDC SDQIDDEDDP
301: KRKKKTGKHT QAKNLHAERR RRKKLNDRLY ALRSLVPRIT KLDRASILGD AINYVKELQN EAKELQDELE ENSETEDGSN RQQGGMSLNG TVLTGFHQGL
401: SCNSNLPDMK QDVDLENCND KGQEMEPQVD VAHLDGREFF VKVICEYKPG GFTRLMEALD SLGLEVTNAN TTRFLSLVSN VFKVEKNDSE MVPAEHVRNS
501: LLEITRNTSR GWHDDQMATG SMQNEKNEVD YQHYDDHHHH GGHHQLHDHQ MNQSAHHHHQ HINHYQNQ

Best Arabidopsis Sequence Match ( AT2G16910.1 )
(BLAST)

001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q

Arabidopsis Description

AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.