Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38270 | Canola | nucleus | 98.79 | 66.26 |
| CDY47924 | Canola | nucleus | 92.73 | 62.2 |
| CDX88610 | Canola | nucleus | 90.3 | 60.57 |
| CDY42237 | Canola | nucleus | 88.48 | 60.33 |
| CDY11882 | Canola | nucleus | 86.06 | 57.72 |
| AT5G57150.4 | Thale cress | nucleus | 78.18 | 48.86 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 36.97 | 38.61 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 56.36 | 38.11 |
| KRH37338 | Soybean | nucleus | 54.55 | 36.89 |
| KRH12334 | Soybean | nucleus | 53.33 | 36.21 |
| PGSC0003DMT400044959 | Potato | nucleus | 44.85 | 32.03 |
| PGSC0003DMT400010463 | Potato | nucleus | 48.48 | 31.75 |
| Solyc07g018010.2.1 | Tomato | nucleus | 48.48 | 31.62 |
| KRH19109 | Soybean | nucleus | 44.24 | 31.6 |
| CDY46719 | Canola | nucleus | 50.3 | 31.44 |
| CDY43542 | Canola | nucleus | 49.7 | 31.18 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 28.48 | 30.72 |
| CDX68608 | Canola | nucleus | 48.48 | 30.42 |
| Solyc05g014590.2.1 | Tomato | nucleus | 42.42 | 30.3 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 38.18 | 30.0 |
| CDY30182 | Canola | nucleus | 44.24 | 29.92 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 43.03 | 27.31 |
| KRH02772 | Soybean | nucleus | 51.52 | 25.0 |
| TraesCS2D01G270300.1 | Wheat | nucleus | 38.79 | 23.02 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 38.18 | 22.66 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 38.18 | 22.66 |
| Zm00001d025141_P003 | Maize | nucleus | 34.55 | 21.76 |
| Zm00001d024522_P001 | Maize | nucleus | 33.33 | 21.32 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 39.39 | 21.31 |
| EES14602 | Sorghum | nucleus | 34.55 | 19.79 |
| Os04t0301500-01 | Rice | nucleus | 35.76 | 19.03 |
| TraesCS2D01G270000.2 | Wheat | nucleus | 30.91 | 19.03 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 33.33 | 18.64 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 30.91 | 18.61 |
| Os04t0300600-00 | Rice | cytosol | 32.12 | 17.97 |
| TraesCS5A01G533900.1 | Wheat | nucleus | 25.45 | 17.8 |
| EES05013 | Sorghum | nucleus | 30.3 | 17.73 |
| TraesCSU01G138400.2 | Wheat | nucleus | 26.67 | 17.53 |
| CDY19416 | Canola | nucleus | 19.39 | 17.3 |
| CDX98033 | Canola | nucleus | 19.39 | 17.3 |
| TraesCS3A01G442600.1 | Wheat | nucleus | 30.3 | 17.12 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 26.67 | 16.6 |
| TraesCS3D01G435200.1 | Wheat | nucleus | 31.52 | 16.46 |
| TraesCS5A01G533200.1 | Wheat | nucleus | 25.45 | 16.41 |
| TraesCSU01G138900.1 | Wheat | nucleus | 25.45 | 16.34 |
| Zm00001d004095_P001 | Maize | nucleus | 30.3 | 16.29 |
| TraesCS3A01G028200.3 | Wheat | nucleus | 26.67 | 16.24 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 24.24 | 15.94 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 24.24 | 15.62 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 24.24 | 15.56 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 27.88 | 14.2 |
| CDX83286 | Canola | nucleus | 24.24 | 12.78 |
| CDY31199 | Canola | nucleus | 23.64 | 12.46 |
| CDY30505 | Canola | nucleus | 23.64 | 12.42 |
| CDX71377 | Canola | nucleus | 23.64 | 12.34 |
| CDX77160 | Canola | nucleus | 23.64 | 12.34 |
| CDY04543 | Canola | nucleus | 23.03 | 12.03 |
| HORVU2Hr1G066000.7 | Barley | nucleus | 19.39 | 11.68 |
| TraesCS3D01G017700.1 | Wheat | nucleus | 26.06 | 11.56 |
| CDX97028 | Canola | cytosol, plastid, vacuole | 5.45 | 9.0 |
| CDY37835 | Canola | nucleus | 18.18 | 8.38 |
| CDY69978 | Canola | nucleus | 18.18 | 8.38 |
| CDY08769 | Canola | nucleus | 17.58 | 8.08 |
| CDX97027 | Canola | nucleus | 14.55 | 8.05 |
| CDX69821 | Canola | nucleus | 14.55 | 7.92 |
| CDY28529 | Canola | nucleus | 18.79 | 7.06 |
| CDY21073 | Canola | nucleus | 18.18 | 6.96 |
| CDX99537 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 8.48 | 6.93 |
| CDY37964 | Canola | nucleus | 16.97 | 6.9 |
| CDY34878 | Canola | cytosol | 15.76 | 6.77 |
| CDY34601 | Canola | nucleus | 18.18 | 6.76 |
| CDX89760 | Canola | nucleus | 23.03 | 6.69 |
| CDX93399 | Canola | nucleus | 16.36 | 6.59 |
| CDY54227 | Canola | nucleus | 15.15 | 6.58 |
| CDY02227 | Canola | nucleus | 22.42 | 6.51 |
| CDY48974 | Canola | nucleus | 18.79 | 6.47 |
| CDY31399 | Canola | nucleus | 21.82 | 6.35 |
| CDX71316 | Canola | nucleus | 21.21 | 6.16 |
Protein Annotations
| EnsemblPlants:CDY52738 | EnsemblPlantsGene:GSBRNA2T00007680001 | Gene3D:4.10.280.10 | GO:A0A078IUP3 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR036638 | ncoils:Coil | PANTHER:PTHR31945 |
| PANTHER:PTHR31945:SF26 | ProteinID:CDY52738 | ProteinID:CDY52738.1 | SEG:seg | UniParc:UPI0004EF1017 | UniProt:A0A078IUP3 |
| MapMan:15.5.32 | : | : | : | : | : |
Description
BnaC09g53380DBnaC09g53380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUP3]
Coordinates
chrLK033123:-:65107..68612
Molecular Weight (calculated)
18604.3 Da
IEP (calculated)
4.423
GRAVY (calculated)
-0.188
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKASIIKDA ISYIQGLQYE ESKLEAEIRE LESTPKSSLS FSKDFDRDLL VPVTSKKMKQ LDSGPSRSLI EVLDLKVTFM GERTVVVNVT CNKRTDTMVK
101: LCEVFESLNL KIITSNLNSF SGMIFNTVFI EAEEEEQEVV RLKIETGIGA YNETQSPTLS IDSLY
101: LCEVFESLNL KIITSNLNSF SGMIFNTVFI EAEEEEQEVV RLKIETGIGA YNETQSPTLS IDSLY
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.