Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G270000.2 | Wheat | nucleus | 65.33 | 66.79 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 64.96 | 64.96 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 44.16 | 47.08 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 39.78 | 43.43 |
| HORVU7Hr1G118860.1 | Barley | plastid | 10.58 | 41.43 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 47.45 | 40.12 |
| KRH37338 | Soybean | nucleus | 31.39 | 35.25 |
| KRH12334 | Soybean | nucleus | 31.02 | 34.98 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 30.29 | 34.02 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 25.18 | 32.86 |
| PGSC0003DMT400010463 | Potato | nucleus | 29.56 | 32.14 |
| KRH19109 | Soybean | nucleus | 27.01 | 32.03 |
| Solyc07g018010.2.1 | Tomato | nucleus | 29.56 | 32.02 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 29.2 | 30.77 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 33.58 | 30.16 |
| PGSC0003DMT400044959 | Potato | nucleus | 25.18 | 29.87 |
| Zm00001d004095_P001 | Maize | nucleus | 32.85 | 29.32 |
| CDY38270 | Canola | nucleus | 26.28 | 29.27 |
| CDY47924 | Canola | nucleus | 26.28 | 29.27 |
| Bra002756.1-P | Field mustard | nucleus | 26.28 | 29.27 |
| Bra020462.1-P | Field mustard | nucleus | 26.28 | 29.27 |
| CDY30182 | Canola | nucleus | 25.91 | 29.1 |
| Bra024115.1-P | Field mustard | nucleus | 25.91 | 29.1 |
| Bra011152.1-P | Field mustard | nucleus | 26.28 | 29.03 |
| CDY42237 | Canola | nucleus | 25.55 | 28.93 |
| CDY11882 | Canola | nucleus | 25.91 | 28.86 |
| CDX88610 | Canola | nucleus | 25.91 | 28.86 |
| Bra006831.1-P | Field mustard | nucleus | 25.91 | 28.86 |
| AT5G57150.4 | Thale cress | nucleus | 27.37 | 28.41 |
| AT4G29930.3 | Thale cress | nucleus | 27.01 | 28.14 |
| CDY43542 | Canola | nucleus | 27.01 | 28.14 |
| CDX68608 | Canola | nucleus | 26.64 | 27.76 |
| CDY46719 | Canola | nucleus | 26.64 | 27.65 |
| Os04t0300600-00 | Rice | cytosol | 28.1 | 26.1 |
| Solyc05g014590.2.1 | Tomato | nucleus | 21.9 | 25.97 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 26.28 | 24.41 |
| KRH02772 | Soybean | nucleus | 27.37 | 22.06 |
| HORVU7Hr1G062400.4 | Barley | plastid | 13.14 | 20.34 |
| CDY52738 | Canola | cytosol | 11.68 | 19.39 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 9.12 | 16.34 |
| HORVU2Hr1G068960.2 | Barley | nucleus | 16.42 | 14.71 |
| HORVU7Hr1G118740.3 | Barley | nucleus | 17.52 | 14.55 |
| HORVU3Hr1G034540.16 | Barley | plastid | 14.6 | 13.47 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 7.66 | 13.29 |
| HORVU4Hr1G080890.1 | Barley | nucleus | 16.79 | 12.96 |
| HORVU4Hr1G032690.2 | Barley | nucleus, plastid | 14.23 | 12.62 |
| HORVU3Hr1G096460.5 | Barley | nucleus | 17.15 | 12.4 |
| HORVU7Hr1G074490.3 | Barley | nucleus | 17.88 | 9.18 |
| HORVU6Hr1G012760.1 | Barley | nucleus | 18.25 | 8.96 |
| HORVU6Hr1G012730.1 | Barley | nucleus | 18.25 | 8.96 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G066000.7 | EnsemblPlantsGene:HORVU2Hr1G066000 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF70 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000B48290A | UniProt:A0A287I989 | MapMan:15.5.32 | : | : |
Description
No Description!
Coordinates
chrchr2H:-:456364433..456372616
Molecular Weight (calculated)
30058.7 Da
IEP (calculated)
5.211
GRAVY (calculated)
-0.675
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: QIPMEADMDM SLDFSWETPN FFEAQVLELA VVDSMYLSAE DSLSGLYSCY DDSSSPDGAS SWSTATTRAT RASKNIIMER DRRRRLNEKL YNLRGVVPNI
101: SKMDKASIIQ DAIAYIEALQ EQERQLLAEI SDLETHNCTA SVGSQAEEDS ADLPRRRKMR RTSSASSIND AITSPVAYPV EILEAGCDEC VGEAVGGEPE
201: ARQGAGRHGQ GVRGAAVAVS QGDHGKCHHR GRQHGPYHIR RDGRGGWSSY NQGDDTACTP PSHVRRNPST SMSY
101: SKMDKASIIQ DAIAYIEALQ EQERQLLAEI SDLETHNCTA SVGSQAEEDS ADLPRRRKMR RTSSASSIND AITSPVAYPV EILEAGCDEC VGEAVGGEPE
201: ARQGAGRHGQ GVRGAAVAVS QGDHGKCHHR GRQHGPYHIR RDGRGGWSSY NQGDDTACTP PSHVRRNPST SMSY
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEFILALQF IC
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEFILALQF IC
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.