Factsheet for Bra006831.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88610	Canola	nucleus	99.59	99.59
Bra002756.1-P	Field mustard	nucleus	89.43	89.43
Bra020462.1-P	Field mustard	nucleus	89.43	89.43
AT5G57150.4	Thale cress	nucleus	81.3	75.76
VIT_11s0052g00100.t01	Wine grape	nucleus	62.2	62.7
KRH37338	Soybean	nucleus	58.54	59.02
KRH12334	Soybean	nucleus	57.72	58.44
Bra024115.1-P	Field mustard	nucleus	54.47	54.92
PGSC0003DMT400010463	Potato	nucleus	54.88	53.57
Solyc07g018010.2.1	Tomato	nucleus	54.88	53.36
KRH19109	Soybean	nucleus	48.78	51.95
Bra011152.1-P	Field mustard	nucleus	51.22	50.81
PGSC0003DMT400044959	Potato	nucleus	46.34	49.35
Solyc05g014590.2.1	Tomato	nucleus	44.31	47.19
GSMUA_Achr7P16000_001	Banana	nucleus	49.59	46.92
GSMUA_Achr6P30900_001	Banana	nucleus	37.4	43.81
TraesCS2D01G270300.1	Wheat	nucleus	45.53	40.29
TraesCS2A01G271700.1	Wheat	nucleus	45.12	39.93
TraesCS2B01G289900.1	Wheat	nucleus	45.12	39.93
KRH02772	Soybean	nucleus	54.47	39.41
Zm00001d025141_P003	Maize	nucleus	41.06	38.55
Zm00001d024522_P001	Maize	nucleus	40.24	38.37
HORVU2Hr1G066100.1	Barley	cytosol, nucleus	45.94	37.05
TraesCS2D01G270000.2	Wheat	nucleus	38.62	35.45
EES14602	Sorghum	nucleus	41.46	35.42
TraesCS2B01G289700.2	Wheat	nucleus	38.62	34.67
Os04t0301500-01	Rice	nucleus	41.87	33.23
TraesCS5A01G533900.1	Wheat	nucleus	31.71	33.05
HORVU2Hr1G066090.2	Barley	cytosol	20.33	32.68
GSMUA_Achr4P12700_001	Banana	nucleus	39.02	32.54
TraesCSU01G138400.2	Wheat	nucleus	32.52	31.87
TraesCS3B01G018400.1	Wheat	nucleus	33.74	31.32
TraesCS5A01G533200.1	Wheat	nucleus	31.71	30.47
TraesCSU01G138900.1	Wheat	nucleus	31.71	30.35
HORVU4Hr1G087590.1	Barley	nucleus	31.3	29.96
EES05013	Sorghum	nucleus	34.15	29.79
TraesCS4B01G364800.1	Wheat	nucleus	30.89	29.69
Os04t0300600-00	Rice	cytosol	34.96	29.15
HORVU4Hr1G087610.1	Barley	nucleus	29.67	29.08
Zm00001d004095_P001	Maize	nucleus	35.37	28.34
TraesCS3A01G028200.3	Wheat	nucleus	30.89	28.04
TraesCS3A01G442600.1	Wheat	nucleus	31.71	26.71
TraesCS3D01G435200.1	Wheat	nucleus	33.33	25.95
HORVU2Hr1G066000.7	Barley	nucleus	28.86	25.91
HORVU3Hr1G005500.3	Barley	cytosol, nucleus	33.33	25.31
TraesCS3D01G017700.1	Wheat	nucleus	33.33	22.04
Bra000495.1-P	Field mustard	nucleus	24.39	19.48
Bra034392.1-P	Field mustard	nucleus	24.8	19.3
Bra011972.1-P	Field mustard	nucleus	23.58	18.35
Bra031852.1-P	Field mustard	nucleus	22.76	15.64
Bra009022.1-P	Field mustard	nucleus	19.11	15.51
Bra024404.1-P	Field mustard	nucleus	22.36	15.32
Bra031723.1-P	Field mustard	cytosol	21.14	13.47
Bra019914.1-P	Field mustard	cytosol	21.54	12.71
Bra019794.1-P	Field mustard	nucleus	21.14	12.24
Bra034246.1-P	Field mustard	nucleus	19.51	11.48
Bra016749.1-P	Field mustard	nucleus	19.92	11.32
Bra032947.1-P	Field mustard	nucleus	19.92	11.09
Bra025226.1-P	Field mustard	nucleus	20.73	10.26
Bra002004.1-P	Field mustard	nucleus	23.58	10.23
Bra013041.1-P	Field mustard	nucleus	23.58	10.21

Protein Annotations

EnsemblPlants:Bra006831.1	EnsemblPlants:Bra006831.1-P	EnsemblPlantsGene:Bra006831	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF26	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000253FD07	UniProt:M4CRJ0	MapMan:15.5.32	:

Description

AT5G57150 (E=2e-109) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA03:-:5242680..5245099

Molecular Weight (calculated)

27883.0 Da

IEP (calculated)

4.428

GRAVY (calculated)

-0.394

Length

246 amino acids

Sequence
(BLAST)

001: MDDINQEFSN YWEPNSFLQN EEFKYDSWPL EEAISGSYDS SSPDGAASSP ASKNIVLERN RRQKLNQRLF ALRAVVPNIT KMDKASIIKD AISYIQGLQY
101: EETKLEAEIR ELESTPKSSL SFGKDFDCDL LVPVTSKRMK QLDSGSSRSL IEVLELKVTF MGERTMVVNV TCNKRTDTMV KLCEVFESLN LKIITSNLNS
201: FSGMIFNTLF IEADEEEQDV LRLKIESGIG AYNGAQSPTW SMESLY

Best Arabidopsis Sequence Match ( AT5G57150.1 )
(BLAST)

001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.