Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G364800.1 | Wheat | nucleus | 93.77 | 94.14 |
| TraesCS5A01G533200.1 | Wheat | nucleus | 92.61 | 92.97 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 86.77 | 86.77 |
| TraesCSU01G138400.2 | Wheat | nucleus | 65.76 | 67.33 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 35.02 | 42.86 |
| KRH37338 | Soybean | nucleus | 38.13 | 40.16 |
| KRH12334 | Soybean | nucleus | 36.58 | 38.68 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 35.41 | 37.3 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 36.58 | 36.15 |
| KRH19109 | Soybean | nucleus | 32.3 | 35.93 |
| PGSC0003DMT400010463 | Potato | nucleus | 35.02 | 35.71 |
| Solyc07g018010.2.1 | Tomato | nucleus | 35.02 | 35.57 |
| Zm00001d004095_P001 | Maize | nucleus | 40.86 | 34.2 |
| Os04t0300600-00 | Rice | cytosol | 37.74 | 32.88 |
| PGSC0003DMT400044959 | Potato | nucleus | 29.18 | 32.47 |
| CDY47924 | Canola | nucleus | 30.74 | 32.11 |
| Bra002756.1-P | Field mustard | nucleus | 30.74 | 32.11 |
| CDY38270 | Canola | nucleus | 30.74 | 32.11 |
| Bra020462.1-P | Field mustard | nucleus | 30.74 | 32.11 |
| CDY42237 | Canola | nucleus | 29.96 | 31.82 |
| Bra006831.1-P | Field mustard | nucleus | 30.35 | 31.71 |
| CDX88610 | Canola | nucleus | 30.35 | 31.71 |
| CDY11882 | Canola | nucleus | 29.96 | 31.3 |
| AT5G57150.4 | Thale cress | nucleus | 31.52 | 30.68 |
| Solyc05g014590.2.1 | Tomato | nucleus | 26.85 | 29.87 |
| CDY43542 | Canola | nucleus | 30.35 | 29.66 |
| CDY30182 | Canola | nucleus | 28.02 | 29.51 |
| Bra024115.1-P | Field mustard | nucleus | 28.02 | 29.51 |
| Bra011152.1-P | Field mustard | nucleus | 28.4 | 29.44 |
| CDX68608 | Canola | nucleus | 29.57 | 28.9 |
| CDY46719 | Canola | nucleus | 28.4 | 27.65 |
| AT4G29930.3 | Thale cress | nucleus | 28.02 | 27.38 |
| KRH02772 | Soybean | nucleus | 35.02 | 26.47 |
| CDY52738 | Canola | cytosol | 16.34 | 25.45 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 28.79 | 25.08 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 11.28 | 18.35 |
| TraesCSU01G069400.1 | Wheat | nucleus | 18.29 | 13.35 |
| TraesCSU01G069300.1 | Wheat | nucleus | 17.51 | 12.78 |
Protein Annotations
| EnsemblPlants:TraesCSU01G138900.1 | EnsemblPlantsGene:TraesCSU01G138900 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF70 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:126964406..126971901
Molecular Weight (calculated)
27786.0 Da
IEP (calculated)
5.028
GRAVY (calculated)
-0.219
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MESDMDVSLD FSWEALVLEL GGADSMYLPA EDSLSGLYDE STSSPDGATS RSTKASSLER KNIINERHRR RMLNEKLYAL RRVVPNITKM DKASIIQDAI
101: AYIEELQEQE RQILAALGTD CCTAVAKADD AASTGSNAED HGVGSSPRKK MRRTTSASSI NGAFSSPAPA THPVQILELE VTQVAEELTM VSMRHGNAHN
201: AIAKVCEALE SLCLKVISTS ITAVASGIVH NMFIETEGMH GAQTIKEMIQ THSAISM
101: AYIEELQEQE RQILAALGTD CCTAVAKADD AASTGSNAED HGVGSSPRKK MRRTTSASSI NGAFSSPAPA THPVQILELE VTQVAEELTM VSMRHGNAHN
201: AIAKVCEALE SLCLKVISTS ITAVASGIVH NMFIETEGMH GAQTIKEMIQ THSAISM
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDRSW PLEEAISGSY DSSSPDGAAS SPASKNIVSE RNRRQKLNQR LFALRSVVPN ITKMDKASII KDAISYIEGL
101: QYEEKKLEAE IRELESTPKS SLSFSKDFDR DLLVPVTSKK MKQLDSGSST SLIEVLELKV TFMGERTMVV SVTCNKRTDT MVKLCEVFES LNLKILTSNL
201: TSFSGMIFHT VFIEVSIFLS LSLLSL
101: QYEEKKLEAE IRELESTPKS SLSFSKDFDR DLLVPVTSKK MKQLDSGSST SLIEVLELKV TFMGERTMVV SVTCNKRTDT MVKLCEVFES LNLKILTSNL
201: TSFSGMIFHT VFIEVSIFLS LSLLSL
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [golgi,nucleus,cytosol]
SUBAcon: [golgi,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.