Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G069400.1 | Wheat | nucleus | 91.48 | 91.48 |
| TraesCS4B01G332000.1 | Wheat | nucleus | 85.8 | 87.03 |
| HORVU4Hr1G080890.1 | Barley | nucleus | 76.99 | 76.34 |
| Os03t0135700-01 | Rice | nucleus | 64.2 | 63.84 |
| EER92904 | Sorghum | nucleus | 63.35 | 59.79 |
| Zm00001d027546_P001 | Maize | nucleus | 59.66 | 57.07 |
| KRH73107 | Soybean | mitochondrion, nucleus | 23.58 | 50.92 |
| GSMUA_Achr7P03930_001 | Banana | nucleus | 33.81 | 50.21 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.39 | 48.1 |
| GSMUA_Achr8P34120_001 | Banana | nucleus | 35.23 | 43.36 |
| KRH16156 | Soybean | nucleus | 32.1 | 41.54 |
| KRH62159 | Soybean | nucleus | 36.93 | 39.39 |
| KRH39520 | Soybean | nucleus | 36.36 | 38.44 |
| KRH74438 | Soybean | nucleus | 36.36 | 38.32 |
| KRH52870 | Soybean | nucleus | 35.51 | 37.76 |
| KRH16909 | Soybean | nucleus | 35.8 | 37.5 |
| VIT_18s0001g08040.t01 | Wine grape | nucleus | 35.23 | 37.13 |
| KRH72519 | Soybean | nucleus | 34.94 | 36.94 |
| KRH45479 | Soybean | nucleus | 33.52 | 36.88 |
| KRG99605 | Soybean | cytosol | 16.19 | 36.08 |
| VIT_00s1312g00010.t01 | Wine grape | nucleus | 33.81 | 35.95 |
| PGSC0003DMT400016360 | Potato | nucleus | 34.09 | 35.5 |
| Solyc12g088130.1.1 | Tomato | nucleus | 32.67 | 34.23 |
| Solyc02g091690.2.1 | Tomato | nucleus | 31.25 | 33.43 |
| PGSC0003DMT400078675 | Potato | nucleus | 31.82 | 33.43 |
| VIT_17s0000g03550.t01 | Wine grape | nucleus | 30.4 | 33.23 |
| PGSC0003DMT400026937 | Potato | nucleus | 30.4 | 32.82 |
| PGSC0003DMT400005209 | Potato | nucleus | 23.86 | 32.56 |
| Solyc02g063430.2.1 | Tomato | nucleus | 29.55 | 32.4 |
| AT5G10570.1 | Thale cress | nucleus | 28.41 | 31.75 |
| CDX97027 | Canola | nucleus | 26.7 | 31.54 |
| AT5G65640.1 | Thale cress | nucleus | 30.97 | 31.05 |
| Bra009022.1-P | Field mustard | nucleus | 26.42 | 30.69 |
| CDX69821 | Canola | nucleus | 26.42 | 30.69 |
| Bra024404.1-P | Field mustard | nucleus | 31.25 | 30.64 |
| CDY08769 | Canola | nucleus | 31.25 | 30.64 |
| Bra031852.1-P | Field mustard | nucleus | 29.83 | 29.33 |
| CDY37835 | Canola | nucleus | 29.83 | 29.33 |
| CDY69978 | Canola | nucleus | 29.83 | 29.33 |
| TraesCSU01G138400.2 | Wheat | nucleus | 12.78 | 17.93 |
| TraesCSU01G138900.1 | Wheat | nucleus | 12.78 | 17.51 |
Protein Annotations
| EnsemblPlants:TraesCSU01G069300.1 | EnsemblPlantsGene:TraesCSU01G069300 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF4 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chrUn:+:60287914..60290270
Molecular Weight (calculated)
34834.9 Da
IEP (calculated)
4.707
GRAVY (calculated)
-0.458
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQLDEQSFL DELMSLRREE APVPAPAPWQ AYPASGMMTT TDLLFYGGEG AAEASSGMDL AGPFQQPMAP PPAAPPHRPH EEFNFDCLSE VCNPYRSCTG
101: GGVPGPGVVH AAGQAYALHD AMAEDHPSCG NLHRGGGSSS SPVPFVFGEG GAGETSEEMT RGVFSGGNPR SKLNRGTTSK NLMAERRRRK RLNDRLSMLR
201: SIVPKISKMD RTSILEDTLD YVNELTERIK TLEEEIGATP EELNLLNTTK NFSSGSSEEM PMRNSTKXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXLEV
301: LGLEIEQCVV SCFGDFAMQA SCSQEEGRSR VTSTDEIKHA LFTSAGYGGR CL
101: GGVPGPGVVH AAGQAYALHD AMAEDHPSCG NLHRGGGSSS SPVPFVFGEG GAGETSEEMT RGVFSGGNPR SKLNRGTTSK NLMAERRRRK RLNDRLSMLR
201: SIVPKISKMD RTSILEDTLD YVNELTERIK TLEEEIGATP EELNLLNTTK NFSSGSSEEM PMRNSTKXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXLEV
301: LGLEIEQCVV SCFGDFAMQA SCSQEEGRSR VTSTDEIKHA LFTSAGYGGR CL
001: MELSTQMNVF EELLVPTKQE TTDNNINNLS FNGGFDHHHH QFFPNGYNID YLCFNNEEED ENTLLYPSSF MDLISQPPPL LLHQPPPLQP LSPPLSSSAT
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
Arabidopsis Description
BHLH93Transcription factor bHLH93 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.