Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400005209 | Potato | nucleus | 71.73 | 93.41 |
| KRH73107 | Soybean | mitochondrion, nucleus | 32.14 | 66.26 |
| GSMUA_Achr1P26300_001 | Banana | nucleus | 44.05 | 61.92 |
| KRG99605 | Soybean | cytosol | 28.87 | 61.39 |
| GSMUA_Achr7P03930_001 | Banana | nucleus | 41.37 | 58.65 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.48 | 57.38 |
| GSMUA_Achr8P34120_001 | Banana | nucleus | 45.24 | 53.15 |
| VIT_18s0001g08040.t01 | Wine grape | nucleus | 51.19 | 51.5 |
| KRH52870 | Soybean | nucleus | 50.0 | 50.76 |
| TraesCS4D01G328700.1 | Wheat | cytosol | 22.02 | 50.68 |
| KRH62159 | Soybean | nucleus | 49.7 | 50.61 |
| VIT_00s1312g00010.t01 | Wine grape | nucleus | 49.11 | 49.85 |
| KRH16909 | Soybean | nucleus | 48.81 | 48.81 |
| KRH74438 | Soybean | nucleus | 48.21 | 48.5 |
| KRH72519 | Soybean | nucleus | 47.92 | 48.35 |
| KRH39520 | Soybean | nucleus | 47.92 | 48.35 |
| KRH16156 | Soybean | nucleus | 37.8 | 46.69 |
| VIT_17s0000g03550.t01 | Wine grape | nucleus | 44.05 | 45.96 |
| KRH45479 | Soybean | nucleus | 43.15 | 45.31 |
| Solyc02g091690.2.1 | Tomato | nucleus | 42.56 | 43.47 |
| Solyc02g063430.2.1 | Tomato | nucleus | 41.07 | 42.99 |
| Os03t0135700-01 | Rice | nucleus | 41.96 | 39.83 |
| TraesCS4B01G331900.1 | Wheat | nucleus | 35.71 | 39.34 |
| EER92904 | Sorghum | nucleus | 41.96 | 37.8 |
| Zm00001d027546_P001 | Maize | nucleus | 41.37 | 37.77 |
| HORVU4Hr1G080890.1 | Barley | nucleus | 39.29 | 37.18 |
| TraesCS4D01G328900.1 | Wheat | nucleus | 38.39 | 37.07 |
| TraesCS4B01G332000.1 | Wheat | nucleus | 38.1 | 36.89 |
| TraesCS4D01G329100.1 | Wheat | nucleus | 38.1 | 36.57 |
| TraesCS3D01G058100.1 | Wheat | nucleus | 32.14 | 36.49 |
| TraesCS3A01G057900.1 | Wheat | nucleus | 35.42 | 36.39 |
| TraesCS4D01G329000.2 | Wheat | nucleus | 37.5 | 35.69 |
| TraesCS5A01G503300.1 | Wheat | nucleus | 37.5 | 35.69 |
| TraesCS5A01G503500.1 | Wheat | nucleus | 37.2 | 35.51 |
| TraesCSU01G069400.1 | Wheat | nucleus | 37.2 | 35.51 |
| TraesCS4D01G328800.1 | Wheat | nucleus | 36.9 | 35.13 |
| TraesCS3B01G070400.1 | Wheat | nucleus | 30.95 | 34.1 |
| TraesCS3A01G058000.1 | Wheat | nucleus | 30.36 | 34.0 |
| TraesCSU01G069300.1 | Wheat | nucleus | 34.23 | 32.67 |
| TraesCS5A01G503400.1 | Wheat | nucleus | 34.82 | 32.41 |
| Solyc05g014590.2.1 | Tomato | nucleus | 15.18 | 22.08 |
| Solyc07g018010.2.1 | Tomato | nucleus | 16.37 | 21.74 |
| Solyc03g118310.2.1 | Tomato | nucleus | 29.76 | 18.94 |
| Solyc06g068870.2.1 | Tomato | nucleus | 28.87 | 18.27 |
| Solyc06g051550.2.1 | Tomato | cytosol | 16.37 | 18.09 |
| Solyc05g005300.2.1 | Tomato | nucleus | 16.37 | 11.41 |
| Solyc08g062780.1.1 | Tomato | nucleus | 20.24 | 11.41 |
Protein Annotations
| EnsemblPlants:Solyc12g088130.1.1 | EnsemblPlantsGene:Solyc12g088130.1 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF15 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000276A9BF | UniProt:K4DGN4 | MapMan:15.5.32 | : | : |
Description
No Description!
Coordinates
chr12:-:63591308..63593093
Molecular Weight (calculated)
38256.3 Da
IEP (calculated)
4.835
GRAVY (calculated)
-0.482
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDYYRENEF LLDELFSLRS DLWESTCLPM EINSSSSNLF CNNINYNCFG EIPLPSTTTT TTTTTSFEDY YNNFPINQSQ NYSLLHNEFY TTQKVDVLSP
101: LELTNSFNSQ LDDFSSIYFD VGNFGDCKLE RTQSTASSAA IAPANFNIGA CLDKKSKKKK VNGEPSKNLM AERRRRKRLN GRLSMLRSIV PKISKMDRTS
201: ILGDTIDYTK ELLEKINNLQ QEMELGSNQL SLMSIFKNEK PIEMFVRNSP KFNVERRNNI DTRVEINCAN KSSLLLSTLT TLDALGLEPQ QCVISCFNDF
301: AMQASCCEEM EQRGVTDAEE IKQALFKNAG YVGKCL
101: LELTNSFNSQ LDDFSSIYFD VGNFGDCKLE RTQSTASSAA IAPANFNIGA CLDKKSKKKK VNGEPSKNLM AERRRRKRLN GRLSMLRSIV PKISKMDRTS
201: ILGDTIDYTK ELLEKINNLQ QEMELGSNQL SLMSIFKNEK PIEMFVRNSP KFNVERRNNI DTRVEINCAN KSSLLLSTLT TLDALGLEPQ QCVISCFNDF
301: AMQASCCEEM EQRGVTDAEE IKQALFKNAG YVGKCL
001: MELSTQMNVF EELLVPTKQE TTDNNINNLS FNGGFDHHHH QFFPNGYNID YLCFNNEEED ENTLLYPSSF MDLISQPPPL LLHQPPPLQP LSPPLSSSAT
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
Arabidopsis Description
BHLH93Transcription factor bHLH93 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.