Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074075 | Potato | nucleus | 96.42 | 96.6 |
| KXG27392 | Sorghum | cytosol | 20.53 | 68.12 |
| VIT_17s0000g00330.t01 | Wine grape | nucleus | 63.65 | 61.45 |
| KRH63854 | Soybean | nucleus | 53.11 | 60.65 |
| KRH54112 | Soybean | nucleus | 52.17 | 59.96 |
| Solyc03g118310.2.1 | Tomato | nucleus | 53.67 | 53.98 |
| GSMUA_Achr10P... | Banana | nucleus | 48.96 | 50.39 |
| GSMUA_Achr11P... | Banana | nucleus | 47.46 | 47.91 |
| TraesCS7A01G311800.1 | Wheat | nucleus | 45.2 | 46.07 |
| TraesCS7D01G308300.1 | Wheat | nucleus | 45.57 | 46.01 |
| TraesCS7B01G211600.1 | Wheat | nucleus | 45.39 | 45.82 |
| Os11t0523700-01 | Rice | nucleus | 44.44 | 45.04 |
| TraesCS4A01G263300.2 | Wheat | nucleus | 40.87 | 44.47 |
| TraesCS4B01G051500.2 | Wheat | nucleus | 41.43 | 44.44 |
| Zm00001d049294_P001 | Maize | nucleus | 42.94 | 44.02 |
| TraesCS4D01G051600.2 | Wheat | nucleus | 41.43 | 44.0 |
| HORVU7Hr1G074490.3 | Barley | nucleus | 43.31 | 43.07 |
| Zm00001d007382_P001 | Maize | nucleus | 41.05 | 42.0 |
| GSMUA_Achr10P... | Banana | nucleus | 8.66 | 33.58 |
| Solyc02g063430.2.1 | Tomato | nucleus | 19.02 | 31.46 |
| Solyc02g091690.2.1 | Tomato | nucleus | 18.46 | 29.79 |
| Solyc12g088130.1.1 | Tomato | nucleus | 18.27 | 28.87 |
| CDX99537 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 10.92 | 28.71 |
| Solyc07g018010.2.1 | Tomato | nucleus | 12.81 | 26.88 |
| Solyc05g014590.2.1 | Tomato | nucleus | 9.23 | 21.21 |
| Solyc06g051550.2.1 | Tomato | cytosol | 11.49 | 20.07 |
| Solyc08g062780.1.1 | Tomato | nucleus | 17.89 | 15.94 |
| Solyc05g005300.2.1 | Tomato | nucleus | 13.37 | 14.73 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.4.3.4.1 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EMBL:JX625139 |
| UniProt:K4C861 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF2 | SMART:SM00353 |
| SUPFAM:SSF47459 | EnsemblPlantsGene:Solyc06g068870.2 | EnsemblPlants:Solyc06g068870.2.1 | UniParc:UPI000276659D | InterPro:bHLH_dom | SEG:seg |
Description
Inducer of CBF expression 1 [Source:UniProtKB/TrEMBL;Acc:K4C861]
Coordinates
chr6:-:42693942..42699381
Molecular Weight (calculated)
58340.4 Da
IEP (calculated)
5.250
GRAVY (calculated)
-0.569
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSRVNSMQV WDMEGKQEEE KEENFSNKEN TTNVELENKQ DMELGALSTF KSMLDGTDVD WYHNNMQNHT ENICFTQNFT ELAENSMFLQ PVVPVDSSSS
101: CSPSSVSVFN NLDPSQVHYL LAQKAINNNP LDYSFNLGCE NGFLEAQGMG GLNKGGFLLA GGGFHDLSSQ NQMGNPNLNS FTQYPSSHLP QNTTTTGFSP
201: LGFVDGSANE NSLFLNRSKL LKPLDNFASN GAQPTLFQKR AALRKNLANT TGGSLGDFGG EIGQNSMNGE NERKRKWGSG EELDDVSFDG CTLSYDSDDL
301: TENVTNKVDD TVKNGGNSSN ATSTVTCGNQ KGKKKGLPAK NLMAERRRRK KLNDRLYMLR SVVPRISKMD RASILGDAIE YLKELLQKIN DLHNELESTP
401: PSSSLTQTTS FYPLTPTGPA LPGRIKEELY PSSFASPLSS PTGQPARVEV KAREGRAVNI HMFCSRRPGL LLSTMRALDN LGLDIQQAVI SCFNGFALDI
501: FRAEQCKEGQ DFHPDQIKAV LLDSAGCHGM I
101: CSPSSVSVFN NLDPSQVHYL LAQKAINNNP LDYSFNLGCE NGFLEAQGMG GLNKGGFLLA GGGFHDLSSQ NQMGNPNLNS FTQYPSSHLP QNTTTTGFSP
201: LGFVDGSANE NSLFLNRSKL LKPLDNFASN GAQPTLFQKR AALRKNLANT TGGSLGDFGG EIGQNSMNGE NERKRKWGSG EELDDVSFDG CTLSYDSDDL
301: TENVTNKVDD TVKNGGNSSN ATSTVTCGNQ KGKKKGLPAK NLMAERRRRK KLNDRLYMLR SVVPRISKMD RASILGDAIE YLKELLQKIN DLHNELESTP
401: PSSSLTQTTS FYPLTPTGPA LPGRIKEELY PSSFASPLSS PTGQPARVEV KAREGRAVNI HMFCSRRPGL LLSTMRALDN LGLDIQQAVI SCFNGFALDI
501: FRAEQCKEGQ DFHPDQIKAV LLDSAGCHGM I
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
Arabidopsis Description
SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.