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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • mitochondrion 1
  • endoplasmic reticulum 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d049294_P001 Maize nucleus 65.7 65.83
EES08566 Sorghum nucleus 64.93 64.81
TraesCS7D01G308300.1 Wheat nucleus 57.42 56.65
TraesCS7B01G211600.1 Wheat nucleus 57.23 56.46
TraesCS7A01G311800.1 Wheat nucleus 56.65 56.43
Os11t0523700-01 Rice nucleus 56.65 56.11
HORVU7Hr1G074490.3 Barley nucleus 55.3 53.75
KRH54112 Soybean nucleus 42.97 48.27
KRH63854 Soybean nucleus 41.43 46.24
VIT_01s0244g00130.t01 Wine grape nucleus 41.81 42.05
PGSC0003DMT400074075 Potato nucleus 42.0 41.13
Solyc06g068870.2.1 Tomato nucleus 42.0 41.05
Zm00001d042263_P001 Maize nucleus 31.79 39.47
Zm00001d036382_P001 Maize nucleus 17.92 29.43
Zm00001d027546_P001 Maize nucleus 17.15 24.18
Zm00001d014814_P002 Maize plastid 16.96 23.98
Zm00001d024522_P001 Maize nucleus 10.98 22.09
Zm00001d025141_P003 Maize nucleus 10.98 21.76
Zm00001d004095_P001 Maize nucleus 12.14 20.52
Zm00001d004007_P001 Maize nucleus 11.56 16.76
Zm00001d025205_P001 Maize nucleus 11.75 16.01
Zm00001d053895_P001 Maize nucleus 17.15 14.24
Protein Annotations
EntrezGene:103648024MapMan:15.5.32MapMan:26.4.3.4.1Gene3D:4.10.280.10UniProt:A0A1D6F5S9ncoils:Coil
GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598
InterPro:IPR036638ProteinID:ONM26642.1PFAM:PF00010PFscan:PS50888PANTHER:PTHR31945PANTHER:PTHR31945:SF12
SMART:SM00353SUPFAM:SSF47459UniParc:UPI0002215114EnsemblPlantsGene:Zm00001d007382EnsemblPlants:Zm00001d007382_P001EnsemblPlants:Zm00001d007382_T001
InterPro:bHLH_domSEG:seg::::
Description
bHLH-transcription factor 96Transcription factor ICE1
Coordinates
chr2:+:230338653..230341206
Molecular Weight (calculated)
53723.8 Da
IEP (calculated)
5.225
GRAVY (calculated)
-0.225
Length
519 amino acids
Sequence
(BLAST)
001: MLPPFGNPLW VPEDMDDQQQ HAPPPTPMEL LTVPAQGHEE QNLLALASAA AVAGAGCVFS SPAMLDDDWY FDPVAAAAAT GAQGHLLLAP PGPVPGPGAG
101: SQMFSLFNVG GAATFDVHGF DIGLGTLGGG SGGDLVPLAG AGNTSNSASF SMSLNAGLLA SSFGGFGTAP AQMPDFGGLG GFDMFNNGAG SSSAAPPPAS
201: ASLTVPFSGR GKPAVLRPLE TFPPVGAQPT LFQKRALRRN GGGEDYDKKR KAEATAAAAG ASSACGGDDA EDDDGGSIDA SGLNYDSEDA CRGVEDSGKK
301: DGKGSNANSA GDGKGKRKRL PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLR KIEELQNEVE SSASPASTAS LPPTPTSFRP
401: LTPTLPALPS RVKEELCPSA LPSPTSKQPR VEVRTTREGR EVNIHMLCAR RPGLLLATMR AIEGLGLDVQ QAVASCFNGF SLDIFKAELC KDGPALLLLP
501: EEEIKSVLLQ SAGLHGVAP
Best Arabidopsis Sequence Match ( AT3G26744.1 )
(BLAST)
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
Arabidopsis Description
SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.