Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- endoplasmic reticulum 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d049294_P001 | Maize | nucleus | 65.7 | 65.83 |
EES08566 | Sorghum | nucleus | 64.93 | 64.81 |
TraesCS7D01G308300.1 | Wheat | nucleus | 57.42 | 56.65 |
TraesCS7B01G211600.1 | Wheat | nucleus | 57.23 | 56.46 |
TraesCS7A01G311800.1 | Wheat | nucleus | 56.65 | 56.43 |
Os11t0523700-01 | Rice | nucleus | 56.65 | 56.11 |
HORVU7Hr1G074490.3 | Barley | nucleus | 55.3 | 53.75 |
KRH54112 | Soybean | nucleus | 42.97 | 48.27 |
KRH63854 | Soybean | nucleus | 41.43 | 46.24 |
VIT_01s0244g00130.t01 | Wine grape | nucleus | 41.81 | 42.05 |
PGSC0003DMT400074075 | Potato | nucleus | 42.0 | 41.13 |
Solyc06g068870.2.1 | Tomato | nucleus | 42.0 | 41.05 |
Zm00001d042263_P001 | Maize | nucleus | 31.79 | 39.47 |
Zm00001d036382_P001 | Maize | nucleus | 17.92 | 29.43 |
Zm00001d027546_P001 | Maize | nucleus | 17.15 | 24.18 |
Zm00001d014814_P002 | Maize | plastid | 16.96 | 23.98 |
Zm00001d024522_P001 | Maize | nucleus | 10.98 | 22.09 |
Zm00001d025141_P003 | Maize | nucleus | 10.98 | 21.76 |
Zm00001d004095_P001 | Maize | nucleus | 12.14 | 20.52 |
Zm00001d004007_P001 | Maize | nucleus | 11.56 | 16.76 |
Zm00001d025205_P001 | Maize | nucleus | 11.75 | 16.01 |
Zm00001d053895_P001 | Maize | nucleus | 17.15 | 14.24 |
Protein Annotations
EntrezGene:103648024 | MapMan:15.5.32 | MapMan:26.4.3.4.1 | Gene3D:4.10.280.10 | UniProt:A0A1D6F5S9 | ncoils:Coil |
GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
InterPro:IPR036638 | ProteinID:ONM26642.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF12 |
SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002215114 | EnsemblPlantsGene:Zm00001d007382 | EnsemblPlants:Zm00001d007382_P001 | EnsemblPlants:Zm00001d007382_T001 |
InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
bHLH-transcription factor 96Transcription factor ICE1
Coordinates
chr2:+:230338653..230341206
Molecular Weight (calculated)
53723.8 Da
IEP (calculated)
5.225
GRAVY (calculated)
-0.225
Length
519 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPPFGNPLW VPEDMDDQQQ HAPPPTPMEL LTVPAQGHEE QNLLALASAA AVAGAGCVFS SPAMLDDDWY FDPVAAAAAT GAQGHLLLAP PGPVPGPGAG
101: SQMFSLFNVG GAATFDVHGF DIGLGTLGGG SGGDLVPLAG AGNTSNSASF SMSLNAGLLA SSFGGFGTAP AQMPDFGGLG GFDMFNNGAG SSSAAPPPAS
201: ASLTVPFSGR GKPAVLRPLE TFPPVGAQPT LFQKRALRRN GGGEDYDKKR KAEATAAAAG ASSACGGDDA EDDDGGSIDA SGLNYDSEDA CRGVEDSGKK
301: DGKGSNANSA GDGKGKRKRL PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLR KIEELQNEVE SSASPASTAS LPPTPTSFRP
401: LTPTLPALPS RVKEELCPSA LPSPTSKQPR VEVRTTREGR EVNIHMLCAR RPGLLLATMR AIEGLGLDVQ QAVASCFNGF SLDIFKAELC KDGPALLLLP
501: EEEIKSVLLQ SAGLHGVAP
101: SQMFSLFNVG GAATFDVHGF DIGLGTLGGG SGGDLVPLAG AGNTSNSASF SMSLNAGLLA SSFGGFGTAP AQMPDFGGLG GFDMFNNGAG SSSAAPPPAS
201: ASLTVPFSGR GKPAVLRPLE TFPPVGAQPT LFQKRALRRN GGGEDYDKKR KAEATAAAAG ASSACGGDDA EDDDGGSIDA SGLNYDSEDA CRGVEDSGKK
301: DGKGSNANSA GDGKGKRKRL PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLR KIEELQNEVE SSASPASTAS LPPTPTSFRP
401: LTPTLPALPS RVKEELCPSA LPSPTSKQPR VEVRTTREGR EVNIHMLCAR RPGLLLATMR AIEGLGLDVQ QAVASCFNGF SLDIFKAELC KDGPALLLLP
501: EEEIKSVLLQ SAGLHGVAP
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
Arabidopsis Description
SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.