Factsheet for Zm00001d004095_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G270000.2	Wheat	nucleus	39.74	45.52
TraesCS2B01G289700.2	Wheat	nucleus	40.07	44.89
GSMUA_Achr6P30900_001	Banana	nucleus	30.29	44.29
VIT_11s0052g00100.t01	Wine grape	nucleus	33.55	42.21
GSMUA_Achr7P16000_001	Banana	nucleus	34.85	41.15
KRH12334	Soybean	nucleus	32.57	41.15
TraesCSU01G138900.1	Wheat	nucleus	34.2	40.86
TraesCS5A01G533900.1	Wheat	nucleus	31.27	40.68
TraesCS4B01G364800.1	Wheat	nucleus	33.88	40.62
KRH37338	Soybean	nucleus	32.25	40.57
HORVU4Hr1G087590.1	Barley	nucleus	33.88	40.47
PGSC0003DMT400010463	Potato	nucleus	32.9	40.08
Solyc07g018010.2.1	Tomato	nucleus	32.9	39.92
TraesCSU01G138400.2	Wheat	nucleus	32.57	39.84
TraesCS5A01G533200.1	Wheat	nucleus	32.9	39.45
KRH19109	Soybean	nucleus	29.64	39.39
Zm00001d025141_P003	Maize	nucleus	33.55	39.31
PGSC0003DMT400044959	Potato	nucleus	29.32	38.96
Zm00001d024522_P001	Maize	nucleus	32.57	38.76
TraesCS3A01G028200.3	Wheat	nucleus	33.88	38.38
TraesCS3B01G018400.1	Wheat	nucleus	32.57	37.74
Solyc05g014590.2.1	Tomato	nucleus	27.69	36.8
CDY42237	Canola	nucleus	28.99	36.78
CDY47924	Canola	nucleus	29.32	36.59
Bra002756.1-P	Field mustard	nucleus	29.32	36.59
Bra020462.1-P	Field mustard	nucleus	29.32	36.59
CDY38270	Canola	nucleus	29.32	36.59
HORVU4Hr1G087610.1	Barley	nucleus	29.64	36.26
CDY11882	Canola	nucleus	28.66	35.77
Os04t0300600-00	Rice	cytosol	34.2	35.59
CDX88610	Canola	nucleus	28.34	35.37
Bra006831.1-P	Field mustard	nucleus	28.34	35.37
Bra024115.1-P	Field mustard	nucleus	27.69	34.84
CDY30182	Canola	nucleus	27.69	34.84
AT5G57150.4	Thale cress	nucleus	29.32	34.09
CDY46719	Canola	nucleus	28.99	33.71
HORVU2Hr1G066000.7	Barley	nucleus	29.32	32.85
CDY43542	Canola	nucleus	27.69	32.32
CDX68608	Canola	nucleus	27.69	32.32
Bra011152.1-P	Field mustard	nucleus	25.73	31.85
CDY52738	Canola	cytosol	16.29	30.3
AT4G29930.3	Thale cress	nucleus	25.73	30.04
HORVU3Hr1G005500.3	Barley	cytosol, nucleus	30.94	29.32
KRH02772	Soybean	nucleus	31.92	28.82
GSMUA_Achr4P12700_001	Banana	nucleus	27.36	28.47
TraesCS3D01G017700.1	Wheat	nucleus	34.2	28.23
CDY03557	Canola	cytosol, nucleus, plastid	12.05	23.42
Zm00001d004007_P001	Maize	nucleus	19.87	17.04
Zm00001d025205_P001	Maize	nucleus	19.87	16.01
Zm00001d027546_P001	Maize	nucleus	17.92	14.95
Zm00001d036382_P001	Maize	nucleus	15.31	14.87
Zm00001d042263_P001	Maize	nucleus	18.89	13.88
Zm00001d014814_P002	Maize	plastid	15.64	13.08
Zm00001d007382_P001	Maize	nucleus	20.52	12.14
Zm00001d049294_P001	Maize	nucleus	19.87	11.78
Zm00001d053895_P001	Maize	nucleus	23.13	11.36

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1D6EDF3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	ProteinID:ONM18318.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF70
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004DE896C	EnsemblPlantsGene:Zm00001d004095	EnsemblPlants:Zm00001d004095_P001	EnsemblPlants:Zm00001d004095_T001
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

bHLH-transcription factor 144basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Coordinates

chr2:-:82544089..82547190

Molecular Weight (calculated)

32916.1 Da

IEP (calculated)

5.065

GRAVY (calculated)

-0.122

Length

307 amino acids

Sequence
(BLAST)

001: MEADSMVAMG CGGFYWQSPP RFLLEPLDLA DIVDSSMYVP TNEADEPVSG LCSSNRPAED YSSSAEGANS CSAAVVPSPP PPPGVTTTTT RNMDMERTRR
101: RKLNERLYAL RSVVPNITKM DKASIVRDAI AHIEHLQEQE RRLLAEISVL QSSDDGTAAA AAVKTEDAAA TGGAAYDVDS VPWRKKPRAV PLPSVYFTDN
201: PTSSISSSPP VRILEVQVSQ AGERVAVVSL WCSRGRDAVG KICLALEPLR LRVVTATITA RGDTVFHTLF VETGETGGAR LKEAILAALA RLNVLANADQ
301: VVHELLG

Best Arabidopsis Sequence Match ( AT5G57150.1 )
(BLAST)

001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.