Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH37338 | Soybean | nucleus | 81.56 | 81.56 |
| KRH12334 | Soybean | nucleus | 79.51 | 79.84 |
| PGSC0003DMT400010463 | Potato | nucleus | 74.59 | 72.22 |
| Solyc07g018010.2.1 | Tomato | nucleus | 74.59 | 71.94 |
| KRH19109 | Soybean | nucleus | 61.48 | 64.94 |
| Bra002756.1-P | Field mustard | nucleus | 63.93 | 63.41 |
| CDY38270 | Canola | nucleus | 63.93 | 63.41 |
| Bra006831.1-P | Field mustard | nucleus | 62.7 | 62.2 |
| CDX88610 | Canola | nucleus | 62.7 | 62.2 |
| CDY11882 | Canola | nucleus | 61.48 | 60.98 |
| PGSC0003DMT400044959 | Potato | nucleus | 57.38 | 60.61 |
| CDY42237 | Canola | nucleus | 59.84 | 60.33 |
| Bra020462.1-P | Field mustard | nucleus | 60.66 | 60.16 |
| CDY47924 | Canola | nucleus | 60.66 | 60.16 |
| CDY52738 | Canola | cytosol | 38.11 | 56.36 |
| Solyc05g014590.2.1 | Tomato | nucleus | 52.05 | 54.98 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 56.97 | 53.46 |
| CDY46719 | Canola | nucleus | 57.38 | 53.03 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 45.08 | 52.38 |
| AT5G57150.4 | Thale cress | nucleus | 56.56 | 52.27 |
| KRH02772 | Soybean | nucleus | 72.54 | 52.06 |
| CDY30182 | Canola | nucleus | 51.64 | 51.64 |
| Bra024115.1-P | Field mustard | nucleus | 51.64 | 51.64 |
| CDY43542 | Canola | nucleus | 54.92 | 50.95 |
| CDX68608 | Canola | nucleus | 54.1 | 50.19 |
| Bra011152.1-P | Field mustard | nucleus | 49.18 | 48.39 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 52.46 | 46.04 |
| AT4G29930.3 | Thale cress | nucleus | 49.59 | 46.01 |
| TraesCS2D01G270300.1 | Wheat | nucleus | 52.05 | 45.68 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 51.64 | 45.32 |
| Zm00001d025141_P003 | Maize | nucleus | 45.49 | 42.37 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 52.87 | 42.3 |
| Zm00001d024522_P001 | Maize | nucleus | 44.26 | 41.86 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 25.41 | 40.52 |
| TraesCS2D01G270000.2 | Wheat | nucleus | 44.26 | 40.3 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 44.67 | 39.78 |
| EES14602 | Sorghum | nucleus | 46.72 | 39.58 |
| Os04t0301500-01 | Rice | nucleus | 47.95 | 37.74 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 24.18 | 37.34 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 39.75 | 36.6 |
| TraesCS5A01G533900.1 | Wheat | nucleus | 34.84 | 36.02 |
| TraesCS5A01G533200.1 | Wheat | nucleus | 37.7 | 35.94 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 37.3 | 35.55 |
| TraesCSU01G138900.1 | Wheat | nucleus | 37.3 | 35.41 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 36.48 | 34.63 |
| TraesCS3A01G028200.3 | Wheat | nucleus | 38.11 | 34.32 |
| TraesCSU01G138400.2 | Wheat | nucleus | 35.25 | 34.26 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 41.39 | 34.24 |
| Os04t0300600-00 | Rice | cytosol | 40.98 | 33.9 |
| EES05013 | Sorghum | nucleus | 38.93 | 33.69 |
| Zm00001d004095_P001 | Maize | nucleus | 42.21 | 33.55 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 33.61 | 32.67 |
| TraesCS3A01G442600.1 | Wheat | nucleus | 37.3 | 31.16 |
| TraesCS3D01G435200.1 | Wheat | nucleus | 39.34 | 30.38 |
| HORVU2Hr1G066000.7 | Barley | nucleus | 34.02 | 30.29 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 37.7 | 28.4 |
| TraesCS3D01G017700.1 | Wheat | nucleus | 40.16 | 26.34 |
| VIT_06s0061g00720.t01 | Wine grape | nucleus | 25.0 | 19.43 |
| VIT_01s0127g00650.t01 | Wine grape | nucleus | 13.52 | 18.75 |
| VIT_18s0001g08040.t01 | Wine grape | nucleus | 24.59 | 17.96 |
| VIT_11s0037g01310.t01 | Wine grape | cytosol | 8.61 | 17.95 |
| VIT_00s1312g00010.t01 | Wine grape | nucleus | 22.54 | 16.62 |
| VIT_17s0000g03550.t01 | Wine grape | nucleus | 21.72 | 16.46 |
| VIT_00s2739g00010.t01 | Wine grape | cytosol | 4.51 | 13.1 |
| VIT_17s0000g00330.t01 | Wine grape | nucleus | 28.28 | 12.55 |
| VIT_14s0068g01200.t01 | Wine grape | nucleus | 27.46 | 12.45 |
| VIT_01s0244g00130.t01 | Wine grape | nucleus | 25.41 | 12.02 |
| VIT_01s0127g00860.t01 | Wine grape | nucleus | 28.69 | 11.44 |
| VIT_03s0038g02540.t01 | Wine grape | nucleus | 28.69 | 10.79 |
Protein Annotations
| EntrezGene:100244514 | wikigene:100244514 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:CBI17910 | ProteinID:CBI17910.3 |
| ncoils:Coil | UniProt:D7SQH9 | EMBL:FN594964 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| EntrezGene:LOC100244514 | wikigene:LOC100244514 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF26 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00015CC6DA | ArrayExpress:VIT_11s0052g00100 | EnsemblPlantsGene:VIT_11s0052g00100 | EnsemblPlants:VIT_11s0052g00100.t01 |
| unigene:Vvi.7115 | RefSeq:XP_002263999 | RefSeq:XP_002263999.1 | InterPro:bHLH_dom | SEG:seg | : |
Description
No Description!
Coordinates
chr11:-:17038489..17041527
Molecular Weight (calculated)
27523.7 Da
IEP (calculated)
5.117
GRAVY (calculated)
-0.467
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNTEEFKNY WETNMFLQSE EFDSWGGLDE AFSGYYDSSS PDGAASSAAS KNIVSERNRR KKLNERLFAL RAVVPNISKM DKASIIKDAI DYIQDLHEQE
101: RRIQAEISEL ESGKSKKSPP GYEFDQEIPV LVSKSKKKRT QHCYDSGGSR VSPIEVLELR VVYMGEKTVV VSLTCSKRTD TMVKLCEVFE SLKLKIITAN
201: ITAFSGRLLK TVFVEADEEE KDVLKIKIET AIAALNDPQS PMSI
101: RRIQAEISEL ESGKSKKSPP GYEFDQEIPV LVSKSKKKRT QHCYDSGGSR VSPIEVLELR VVYMGEKTVV VSLTCSKRTD TMVKLCEVFE SLKLKIITAN
201: ITAFSGRLLK TVFVEADEEE KDVLKIKIET AIAALNDPQS PMSI
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.