Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0068g01200.t01 | Wine grape | nucleus | 56.2 | 53.9 |
| VIT_17s0000g00330.t01 | Wine grape | nucleus | 54.46 | 51.09 |
| Zm00001d049294_P001 | Maize | nucleus | 44.19 | 44.02 |
| EES08566 | Sorghum | nucleus | 43.8 | 43.46 |
| TraesCS7B01G211600.1 | Wheat | nucleus | 44.19 | 43.35 |
| TraesCS7D01G308300.1 | Wheat | nucleus | 44.19 | 43.35 |
| TraesCS7A01G311800.1 | Wheat | nucleus | 43.6 | 43.19 |
| Os11t0523700-01 | Rice | nucleus | 43.8 | 43.13 |
| Zm00001d007382_P001 | Maize | nucleus | 42.05 | 41.81 |
| HORVU7Hr1G074490.3 | Barley | nucleus | 42.64 | 41.2 |
| TraesCS4A01G263300.2 | Wheat | nucleus | 38.57 | 40.78 |
| TraesCS4B01G051500.2 | Wheat | nucleus | 38.76 | 40.4 |
| TraesCS4D01G051600.2 | Wheat | nucleus | 38.57 | 39.8 |
| VIT_00s2739g00010.t01 | Wine grape | cytosol | 6.4 | 39.29 |
| CDX97028 | Canola | cytosol, plastid, vacuole | 6.78 | 35.0 |
| VIT_18s0001g08040.t01 | Wine grape | nucleus | 19.96 | 30.84 |
| VIT_17s0000g03550.t01 | Wine grape | nucleus | 19.19 | 30.75 |
| GSMUA_Achr10P... | Banana | nucleus | 7.95 | 29.93 |
| VIT_00s1312g00010.t01 | Wine grape | nucleus | 19.19 | 29.91 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 12.02 | 25.41 |
| VIT_11s0037g01310.t01 | Wine grape | cytosol | 5.62 | 24.79 |
| VIT_01s0127g00650.t01 | Wine grape | nucleus | 8.14 | 23.86 |
| VIT_06s0061g00720.t01 | Wine grape | nucleus | 12.4 | 20.38 |
| VIT_01s0127g00860.t01 | Wine grape | nucleus | 18.99 | 16.01 |
| VIT_03s0038g02540.t01 | Wine grape | nucleus | 19.19 | 15.25 |
Protein Annotations
| EntrezGene:100245461 | wikigene:100245461 | MapMan:15.5.32 | MapMan:26.4.3.4.1 | Gene3D:4.10.280.10 | InterPro:ACT_dom |
| ProteinID:CCB59115 | ProteinID:CCB59115.1 | ncoils:Coil | UniProt:F6HWQ1 | EMBL:FN596277 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR002912 | InterPro:IPR011598 |
| InterPro:IPR036638 | EntrezGene:LOC100245461 | wikigene:LOC100245461 | PFAM:PF00010 | PFscan:PS50888 | PFscan:PS51671 |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF2 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0001982A8F | ArrayExpress:VIT_01s0244g00130 |
| EnsemblPlantsGene:VIT_01s0244g00130 | EnsemblPlants:VIT_01s0244g00130.t01 | unigene:Vvi.19717 | RefSeq:XP_002267169 | RefSeq:XP_002267169.2 | RefSeq:XP_010656833.1 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:21696243..21698959
Molecular Weight (calculated)
55579.8 Da
IEP (calculated)
5.076
GRAVY (calculated)
-0.378
Length
516 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPRSNDVVW TRSDAVSWSK NSNDNRFGDG GGDGERTSSV SALKAIVEEE WLVSGVEMKG NLVSQSQSGA VNSLLHPMDC SSSCSPASAF GLDPAFQGKS
101: CLSSMVCGYP FDGSFDLVCD PGFLEPIPEI QAPSSSSLMG FNDLASQPLM GASNLGSNSQ FPATHLAGNG GNAATGGFNP SGFEGFVGSS LFVDRCKVLK
201: PLENFPSVGS QPTLFQKRAI LRRNSTERAG NYGVSGQEGS AIPVRVAGED KGKRPVVEEE MDKMRKDKSN DEDDMDEASI ARSGLIYDSD DAIENHKVEE
301: TANDGGDNSN LNGSSIGGDR KGKKKGLPAK NLMAERRRRK KLNDRLYMLR SVVPKISKMD RASILADAIE YLKELLQRIN DLQNELESIT PQSLLQPTSS
401: FQPLTPTIPT LPCRVREEIC PGSLPSPNSQ PRVEVRQREG GAVNIHMFCA RRPGLLLSAM RALDGLGLDV QQAVISCFNG FALDIFQAEQ SKEGLEVLPE
501: QIKAVLLNIA GFHGVM
101: CLSSMVCGYP FDGSFDLVCD PGFLEPIPEI QAPSSSSLMG FNDLASQPLM GASNLGSNSQ FPATHLAGNG GNAATGGFNP SGFEGFVGSS LFVDRCKVLK
201: PLENFPSVGS QPTLFQKRAI LRRNSTERAG NYGVSGQEGS AIPVRVAGED KGKRPVVEEE MDKMRKDKSN DEDDMDEASI ARSGLIYDSD DAIENHKVEE
301: TANDGGDNSN LNGSSIGGDR KGKKKGLPAK NLMAERRRRK KLNDRLYMLR SVVPKISKMD RASILADAIE YLKELLQRIN DLQNELESIT PQSLLQPTSS
401: FQPLTPTIPT LPCRVREEIC PGSLPSPNSQ PRVEVRQREG GAVNIHMFCA RRPGLLLSAM RALDGLGLDV QQAVISCFNG FALDIFQAEQ SKEGLEVLPE
501: QIKAVLLNIA GFHGVM
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
Arabidopsis Description
SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.