Factsheet for VIT_06s0061g00720.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0061g00720.t01
VIT_08s0007g05300.t01
VIT_13s0047g00450.t01
VIT_13s0073g00400.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28160.1	VIT_06s0061g00720.t01	AT2G28160.1	18268542
AT2G28160.1	VIT_08s0007g05300.t01	AT3G56970.1	18268542
AT2G28160.1	VIT_13s0047g00450.t01	AT3G56970.1	18268542
AT2G28160.1	VIT_13s0073g00400.t01	AT3G56970.1	18268542
AT2G28160.1	VIT_08s0007g05300.t01	AT3G56980.1	18268542
AT2G28160.1	VIT_13s0047g00450.t01	AT3G56980.1	18268542
AT2G28160.1	VIT_13s0073g00400.t01	AT3G56980.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22827	Soybean	nucleus	55.41	53.87
PGSC0003DMT400048941	Potato	nucleus	52.87	53.21
Solyc06g051550.2.1	Tomato	cytosol	50.96	52.63
KRH26533	Soybean	nucleus	52.55	51.24
AT2G28160.1	Thale cress	nucleus	51.59	50.94
Bra011972.1-P	Field mustard	nucleus	50.32	50.0
CDX71377	Canola	nucleus	50.32	50.0
CDY04543	Canola	nucleus	50.32	50.0
Bra034392.1-P	Field mustard	nucleus	49.68	49.37
CDY30505	Canola	nucleus	49.36	49.36
CDX83286	Canola	nucleus	49.04	49.2
CDX77160	Canola	nucleus	49.36	49.05
CDY31199	Canola	nucleus	48.73	48.88
KRH25108	Soybean	nucleus	44.27	48.77
Bra000495.1-P	Field mustard	nucleus	47.77	48.7
KRH30560	Soybean	nucleus	48.09	48.4
GSMUA_Achr6P27600_001	Banana	nucleus	33.44	34.54
HORVU2Hr1G068960.2	Barley	nucleus	28.34	29.09
TraesCS2A01G281200.1	Wheat	nucleus	29.62	27.51
TraesCS2B01G298600.1	Wheat	nucleus	29.94	27.41
TraesCS2D01G280100.1	Wheat	nucleus	29.3	27.14
KXG26070	Sorghum	nucleus	31.21	26.78
Os04t0381700-00	Rice	nucleus	29.94	26.7
Zm00001d004007_P001	Maize	nucleus	29.94	26.26
Zm00001d025205_P001	Maize	nucleus	31.21	25.72
VIT_11s0052g00100.t01	Wine grape	nucleus	19.43	25.0
VIT_11s0037g01310.t01	Wine grape	cytosol	8.28	22.22
VIT_01s0127g00650.t01	Wine grape	nucleus	10.51	18.75
VIT_18s0001g08040.t01	Wine grape	nucleus	17.83	16.77
VIT_00s2739g00010.t01	Wine grape	cytosol	4.46	16.67
VIT_17s0000g03550.t01	Wine grape	nucleus	16.88	16.46
VIT_00s1312g00010.t01	Wine grape	nucleus	17.2	16.31
VIT_14s0068g01200.t01	Wine grape	nucleus	22.61	13.2
VIT_17s0000g00330.t01	Wine grape	nucleus	21.97	12.55
VIT_01s0244g00130.t01	Wine grape	nucleus	20.38	12.4
VIT_01s0127g00860.t01	Wine grape	nucleus	19.43	9.97
VIT_03s0038g02540.t01	Wine grape	nucleus	20.06	9.71

Protein Annotations

EntrezGene:100262004	wikigene:100262004	MapMan:15.5.32	MapMan:25.4.1.5	Gene3D:4.10.280.10	EMBL:AM426475
ProteinID:CAN64538	ProteinID:CAN64538.1	ProteinID:CBI17134	ProteinID:CBI17134.3	ncoils:Coil	UniProt:D7SNA5
EMBL:FN594957	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100262004	wikigene:LOC100262004	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR31945	PANTHER:PTHR31945:SF17	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00015C9CE2	ArrayExpress:VIT_06s0061g00720
EnsemblPlantsGene:VIT_06s0061g00720	EnsemblPlants:VIT_06s0061g00720.t01	RefSeq:XP_002272647	RefSeq:XP_002272647.1	InterPro:bHLH_dom	SEG:seg

Description

No Description!

Coordinates

chr6:+:18252326..18253568

Molecular Weight (calculated)

34920.6 Da

IEP (calculated)

4.909

GRAVY (calculated)

-0.311

Length

314 amino acids

Sequence
(BLAST)

001: MDRRDASAGT LPNVTDFGFH DFINEPNFEQ LIELIRGESA DSLVKFCPNY DCEHMNGCLD DNQFGSSVGE LFEFDPATAT VSNPDSVIDS LPSIDGEMKG
101: GEEIDGEDSS GNTTTTPTKG TKVDRSRTLI SERRRRVRMK EKLYALRSLV PNITKMDKAS IVGDAVLYVQ QLQMQAKKLK AEIGGLESSL VLGAERYNGL
201: VEIPKKIQVA RSHHPMCGKI FQMDVFQVEE RGFYVRLACN RGERVAVSLY KALESLTGFS IQSSNLATFS ETFVLTFTLN VRECDESMNL PNLKLWLTGA
301: LLNQGFEFKT LPSS

Best Arabidopsis Sequence Match ( AT2G28160.1 )
(BLAST)

001: MEGRVNALSN INDLELHNFL VDPNFDQFIN LIRGDHQTID ENPVLDFDLG PLQNSPCFID ENQFIPTPVD DLFDELPDLD SNVAESFRSF DGDSVRAGGE
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT

Arabidopsis Description

FITTranscription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Source:UniProtKB/Swiss-Prot;Acc:Q0V7X4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.