Factsheet for VIT_14s0068g01200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08070_001	Banana	nucleus	34.94	86.24
CDX98033	Canola	nucleus	28.81	83.78
CDY19416	Canola	nucleus	28.62	83.24
Bra032947.1-P	Field mustard	nucleus	52.23	63.57
Bra034246.1-P	Field mustard	nucleus	49.26	63.4
CDY28529	Canola	nucleus	50.93	62.41
AT3G26744.1	Thale cress	nucleus	57.25	62.35
VIT_17s0000g00330.t01	Wine grape	nucleus	63.01	61.64
Bra025226.1-P	Field mustard	nucleus	56.32	60.97
AT1G12860.1	Thale cress	nucleus	50.56	60.44
CDY48974	Canola	nucleus	52.6	59.08
KRG94685	Soybean	nucleus	46.47	58.69
Bra019794.1-P	Field mustard	nucleus	45.91	58.12
KRH06841	Soybean	nucleus	48.14	57.56
CDY21073	Canola	nucleus	45.91	57.31
CDY34601	Canola	nucleus	47.21	57.21
Bra016749.1-P	Field mustard	nucleus	45.91	57.04
GSMUA_Achr10P...	Banana	nucleus	53.9	56.97
VIT_01s0244g00130.t01	Wine grape	nucleus	53.9	56.2
KRH08406	Soybean	nucleus	45.72	55.41
HORVU3Hr1G096460.5	Barley	nucleus	36.99	52.51
TraesCS3B01G476000.1	Wheat	nucleus	36.8	52.24
TraesCS3D01G434900.1	Wheat	nucleus	36.8	51.97
EES04142	Sorghum	nucleus	36.06	51.6
TraesCS3A01G442200.1	Wheat	nucleus	36.43	51.17
Os01t0928000-01	Rice	nucleus	35.87	50.66
Solyc03g118310.2.1	Tomato	nucleus	48.51	49.43
PGSC0003DMT400036951	Potato	nucleus	48.88	47.73
Zm00001d042263_P001	Maize	nucleus	36.62	47.13
VIT_00s2739g00010.t01	Wine grape	cytosol	6.69	42.86
VIT_18s0001g08040.t01	Wine grape	nucleus	20.45	32.93
VIT_00s1312g00010.t01	Wine grape	nucleus	19.52	31.72
VIT_17s0000g03550.t01	Wine grape	nucleus	18.77	31.37
VIT_11s0052g00100.t01	Wine grape	nucleus	12.45	27.46
VIT_11s0037g01310.t01	Wine grape	cytosol	5.95	27.35
VIT_01s0127g00650.t01	Wine grape	nucleus	7.99	24.43
VIT_06s0061g00720.t01	Wine grape	nucleus	13.2	22.61
VIT_01s0127g00860.t01	Wine grape	nucleus	19.33	16.99
VIT_03s0038g02540.t01	Wine grape	nucleus	19.33	16.02

Protein Annotations

EntrezGene:100265294	wikigene:100265294	MapMan:15.5.32	MapMan:26.4.3.4.1	Gene3D:4.10.280.10	ProteinID:AFI49627
ProteinID:AFI49627.1	EMBL:AM436413	ProteinID:CAN62843	ProteinID:CAN62843.1	ProteinID:CCB46978	ProteinID:CCB46978.1
ncoils:Coil	UniProt:F6H435	EMBL:FN595232	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EMBL:JQ707298	EntrezGene:LOC100265294
wikigene:LOC100265294	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR31945	PANTHER:PTHR31945:SF13	SMART:SM00353
SUPFAM:SSF47459	TIGR:TC63142	TIGR:TC70771	UniParc:UPI00015C87AB	ArrayExpress:VIT_14s0068g01200	EnsemblPlantsGene:VIT_14s0068g01200
EnsemblPlants:VIT_14s0068g01200.t01	unigene:Vvi.1971	RefSeq:XP_002275711	RefSeq:XP_002275711.1	InterPro:bHLH_dom	SEG:seg

Description

No Description!

Coordinates

chr14:-:24969765..24974465

Molecular Weight (calculated)

58319.7 Da

IEP (calculated)

4.870

GRAVY (calculated)

-0.406

Length

538 amino acids

Sequence
(BLAST)

001: MLSRVNGVVW MDGDDEDAVS WTRNNEVEPK DDDMGASLST FKSMLEGDWY VNSSMNPAHQ DIHAIQNHHD IRDIGFCSNP SAATDSLLLQ PLDSSSSCSP
101: SPAFTLDPSQ SQPFLPPKSC FSSLLNVVCS NPFDNGFDLG CEPGFLAPLQ GIQSSNSPGL MGFTGLSSQT QMGTPELSSS SEFPISRLLP ASDSTGSLGA
201: GFTPAGFEGF DGSGNSLFLN RSKVLRPLEV FPPVGAQPTL FQKRAALRQS SSASDKLGNL GFLGCRSSEV QTMVVDGNWG NRVDEELEKK KNKNEEEEID
301: EGSFDVSGLN YDSDEPTVDE LAKNGGSNSN ANSTVTGGDQ KGKKKGLPAK NLMAERRRRK KLNDRLYMLR SVVPKISKMD RASILGDAIE YLKELLQRIN
401: DLHNELESTP SGSLLAPAST SFHPLTPTPP TLPCRVKEEL CPSSLPSPKS QPARVEVRVR EGRAVNIHMF CARRPGLLLS TMRALDNLGL DIQQAVISCF
501: NGFALDVFRA EQCREGQDVL PEQIKAVLLD SAGFHGML

Best Arabidopsis Sequence Match ( AT3G26744.1 )
(BLAST)

001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI

Arabidopsis Description

SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.