Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025226.1-P | Field mustard | nucleus | 90.69 | 90.14 |
| Bra032947.1-P | Field mustard | nucleus | 77.53 | 86.65 |
| CDY48974 | Canola | nucleus | 77.13 | 79.54 |
| GSMUA_Achr6P08070_001 | Banana | nucleus | 34.21 | 77.52 |
| AT1G12860.1 | Thale cress | nucleus | 63.16 | 69.33 |
| VIT_14s0068g01200.t01 | Wine grape | nucleus | 62.35 | 57.25 |
| KRG94685 | Soybean | nucleus | 46.76 | 54.23 |
| KRH06841 | Soybean | nucleus | 46.36 | 50.89 |
| KRH08406 | Soybean | nucleus | 44.94 | 50.0 |
| GSMUA_Achr10P... | Banana | nucleus | 49.39 | 47.94 |
| TraesCS3B01G476000.1 | Wheat | nucleus | 36.64 | 47.76 |
| EES04142 | Sorghum | nucleus | 36.23 | 47.61 |
| TraesCS3D01G434900.1 | Wheat | nucleus | 36.64 | 47.51 |
| HORVU3Hr1G096460.5 | Barley | nucleus | 36.23 | 47.23 |
| TraesCS3A01G442200.1 | Wheat | nucleus | 36.23 | 46.74 |
| Os01t0928000-01 | Rice | nucleus | 35.83 | 46.46 |
| Solyc03g118310.2.1 | Tomato | nucleus | 48.38 | 45.27 |
| PGSC0003DMT400036951 | Potato | nucleus | 48.99 | 43.92 |
| Zm00001d042263_P001 | Maize | nucleus | 36.44 | 43.06 |
| AT5G65640.1 | Thale cress | nucleus | 21.05 | 29.63 |
| AT5G10570.1 | Thale cress | nucleus | 18.42 | 28.89 |
| AT5G57150.4 | Thale cress | nucleus | 10.53 | 19.7 |
| AT4G29930.3 | Thale cress | nucleus | 10.32 | 19.39 |
| AT2G28160.1 | Thale cress | nucleus | 11.54 | 17.92 |
| AT2G16910.1 | Thale cress | nucleus | 18.83 | 16.29 |
| AT1G10610.1 | Thale cress | nucleus | 13.36 | 14.97 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.4.3.4.1 | Gene3D:4.10.280.10 | EntrezGene:822287 | UniProt:A0A0D5MF12 | UniProt:A0A178VDZ0 |
| ProteinID:AEE77208.1 | ProteinID:AEE77209.1 | ProteinID:AEE77210.1 | ProteinID:AJY59345.1 | EMBL:AK228443 | ProteinID:ANM65181.1 |
| ArrayExpress:AT3G26744 | EnsemblPlantsGene:AT3G26744 | RefSeq:AT3G26744 | TAIR:AT3G26744 | RefSeq:AT3G26744-TAIR-G | EnsemblPlants:AT3G26744.1 |
| TAIR:AT3G26744.1 | EMBL:AY079016 | EMBL:AY195621 | Unigene:At.25302 | ProteinID:BAB01738.1 | EMBL:BT020379 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010440 |
| GO:GO:0045893 | GO:GO:0046983 | GO:GO:0050826 | InterPro:HLH_DNA-bd_sf | Symbol:ICE1 | InterPro:IPR011598 |
| InterPro:IPR036638 | RefSeq:NP_001030774.1 | RefSeq:NP_001030776.2 | RefSeq:NP_001327170.1 | RefSeq:NP_189309.2 | ProteinID:OAP03891.1 |
| PFAM:PF00010 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000263 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0002000 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50888 | PANTHER:PTHR31945 |
| PANTHER:PTHR31945:SF13 | UniProt:Q9LSE2 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00000A1413 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
Coordinates
chr3:-:9832689..9835279
Molecular Weight (calculated)
53542.0 Da
IEP (calculated)
5.116
GRAVY (calculated)
-0.519
Length
494 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.