Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47924 | Canola | nucleus | 77.27 | 82.93 |
| CDY38270 | Canola | nucleus | 76.89 | 82.52 |
| Bra002756.1-P | Field mustard | nucleus | 76.89 | 82.52 |
| Bra020462.1-P | Field mustard | nucleus | 76.89 | 82.52 |
| CDY42237 | Canola | nucleus | 75.38 | 82.23 |
| CDX88610 | Canola | nucleus | 76.14 | 81.71 |
| Bra006831.1-P | Field mustard | nucleus | 75.76 | 81.3 |
| CDY11882 | Canola | nucleus | 73.48 | 78.86 |
| CDY52738 | Canola | cytosol | 48.86 | 78.18 |
| KRH37338 | Soybean | nucleus | 52.27 | 56.56 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 52.27 | 56.56 |
| KRH12334 | Soybean | nucleus | 51.89 | 56.38 |
| KRH19109 | Soybean | nucleus | 46.21 | 52.81 |
| AT4G29930.3 | Thale cress | nucleus | 50.0 | 50.19 |
| PGSC0003DMT400010463 | Potato | nucleus | 46.59 | 48.81 |
| Solyc07g018010.2.1 | Tomato | nucleus | 46.59 | 48.62 |
| PGSC0003DMT400044959 | Potato | nucleus | 39.02 | 44.59 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 43.56 | 44.23 |
| Solyc05g014590.2.1 | Tomato | nucleus | 36.74 | 41.99 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 33.33 | 41.9 |
| TraesCS2D01G270300.1 | Wheat | nucleus | 40.53 | 38.49 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 40.15 | 38.13 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 40.15 | 38.13 |
| KRH02772 | Soybean | nucleus | 48.11 | 37.35 |
| Zm00001d024522_P001 | Maize | nucleus | 35.98 | 36.82 |
| Zm00001d025141_P003 | Maize | nucleus | 36.36 | 36.64 |
| TraesCS2D01G270000.2 | Wheat | nucleus | 36.36 | 35.82 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 41.29 | 35.74 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 36.36 | 35.04 |
| EES14602 | Sorghum | nucleus | 36.74 | 33.68 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 33.71 | 33.58 |
| TraesCS5A01G533900.1 | Wheat | nucleus | 29.55 | 33.05 |
| TraesCSU01G138400.2 | Wheat | nucleus | 30.68 | 32.27 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 18.56 | 32.03 |
| Os04t0301500-01 | Rice | nucleus | 37.5 | 31.94 |
| TraesCSU01G138900.1 | Wheat | nucleus | 30.68 | 31.52 |
| TraesCS5A01G533200.1 | Wheat | nucleus | 29.92 | 30.86 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 29.55 | 30.47 |
| TraesCS3A01G028200.3 | Wheat | nucleus | 30.68 | 29.89 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 28.41 | 29.88 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 33.33 | 29.83 |
| Os04t0300600-00 | Rice | cytosol | 33.33 | 29.83 |
| Zm00001d004095_P001 | Maize | nucleus | 34.09 | 29.32 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 28.41 | 29.18 |
| EES05013 | Sorghum | nucleus | 29.55 | 27.66 |
| HORVU2Hr1G066000.7 | Barley | nucleus | 28.41 | 27.37 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 32.58 | 26.54 |
| TraesCS3A01G442600.1 | Wheat | nucleus | 28.79 | 26.03 |
| TraesCS3D01G435200.1 | Wheat | nucleus | 29.55 | 24.68 |
| TraesCS3D01G017700.1 | Wheat | nucleus | 33.33 | 23.66 |
| AT2G28160.1 | Thale cress | nucleus | 22.35 | 18.55 |
| AT5G10570.1 | Thale cress | nucleus | 21.97 | 18.41 |
| AT5G65640.1 | Thale cress | nucleus | 21.21 | 15.95 |
| AT1G10610.1 | Thale cress | nucleus | 20.83 | 12.47 |
| AT1G12860.1 | Thale cress | nucleus | 19.7 | 11.56 |
| AT2G16910.1 | Thale cress | nucleus | 24.62 | 11.38 |
| AT3G26744.1 | Thale cress | nucleus | 19.7 | 10.53 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:835821 | ProteinID:AED96856.1 | ArrayExpress:AT5G57150 | EnsemblPlantsGene:AT5G57150 |
| RefSeq:AT5G57150 | TAIR:AT5G57150 | RefSeq:AT5G57150-TAIR-G | EnsemblPlants:AT5G57150.4 | TAIR:AT5G57150.4 | ncoils:Coil |
| UniProt:F4KAJ5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_001190556.1 | PFAM:PF00010 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF26 | SMART:SM00353 | SUPFAM:SSF47459 |
| TMHMM:TMhelix | UniParc:UPI0001E930D5 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
Coordinates
chr5:+:23152174..23154941
Molecular Weight (calculated)
30451.8 Da
IEP (calculated)
7.904
GRAVY (calculated)
-0.166
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDRSW PLEEAISGSY DSSSPDGAAS SPASKNIVSE RNRRQKLNQR LFALRSVVPN ITKMDKASII KDAISYIEGL
101: QYEEKKLEAE IRELESTPKS SLSFSKDFDR DLLVPVTSKK MKQLDSGSST SLIEVLELKV TFMGERTMVV SVTCNKRTDT MVKLCEVFES LNLKILTSNL
201: TSFSGMIFHT VFIELRPNIY WVVWFLVFMS IFGPTIIVIW SIWFIKKKII LSLWRMKKNK RCCG
101: QYEEKKLEAE IRELESTPKS SLSFSKDFDR DLLVPVTSKK MKQLDSGSST SLIEVLELKV TFMGERTMVV SVTCNKRTDT MVKLCEVFES LNLKILTSNL
201: TSFSGMIFHT VFIELRPNIY WVVWFLVFMS IFGPTIIVIW SIWFIKKKII LSLWRMKKNK RCCG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.