Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G138400.2 | Wheat | nucleus | 91.95 | 86.45 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 81.78 | 76.89 |
| TraesCS5A01G533200.1 | Wheat | nucleus | 67.37 | 62.11 |
| TraesCS3A01G028200.3 | Wheat | nucleus | 58.9 | 51.29 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 34.75 | 39.05 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 43.64 | 37.05 |
| KRH12334 | Soybean | nucleus | 37.71 | 36.63 |
| KRH37338 | Soybean | nucleus | 37.71 | 36.48 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 38.98 | 35.38 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 36.02 | 34.84 |
| KRH19109 | Soybean | nucleus | 33.9 | 34.63 |
| PGSC0003DMT400010463 | Potato | nucleus | 35.17 | 32.94 |
| Solyc07g018010.2.1 | Tomato | nucleus | 35.17 | 32.81 |
| CDX88610 | Canola | nucleus | 33.05 | 31.71 |
| Bra006831.1-P | Field mustard | nucleus | 33.05 | 31.71 |
| CDY11882 | Canola | nucleus | 32.63 | 31.3 |
| Zm00001d004095_P001 | Maize | nucleus | 40.68 | 31.27 |
| PGSC0003DMT400044959 | Potato | nucleus | 30.51 | 31.17 |
| CDY38270 | Canola | nucleus | 32.2 | 30.89 |
| Bra002756.1-P | Field mustard | nucleus | 32.2 | 30.89 |
| Os04t0300600-00 | Rice | cytosol | 38.56 | 30.85 |
| CDY42237 | Canola | nucleus | 30.93 | 30.17 |
| CDY47924 | Canola | nucleus | 31.36 | 30.08 |
| Bra020462.1-P | Field mustard | nucleus | 31.36 | 30.08 |
| AT5G57150.4 | Thale cress | nucleus | 33.05 | 29.55 |
| CDY30182 | Canola | nucleus | 30.51 | 29.51 |
| Bra024115.1-P | Field mustard | nucleus | 30.51 | 29.51 |
| Solyc05g014590.2.1 | Tomato | nucleus | 27.54 | 28.14 |
| Bra011152.1-P | Field mustard | nucleus | 28.81 | 27.42 |
| CDY46719 | Canola | nucleus | 29.66 | 26.52 |
| CDY43542 | Canola | nucleus | 29.24 | 26.24 |
| CDY52738 | Canola | cytosol | 17.8 | 25.45 |
| AT4G29930.3 | Thale cress | nucleus | 27.97 | 25.1 |
| CDX68608 | Canola | nucleus | 27.97 | 25.1 |
| TraesCS3A01G442600.1 | Wheat | nucleus | 30.93 | 25.0 |
| KRH02772 | Soybean | nucleus | 34.75 | 24.12 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 29.66 | 23.73 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 11.44 | 17.09 |
| TraesCS7A01G543300.1 | Wheat | nucleus | 20.34 | 14.59 |
| TraesCS2A01G281200.1 | Wheat | nucleus | 19.92 | 13.91 |
| TraesCS3A01G057900.1 | Wheat | nucleus | 18.22 | 13.15 |
| TraesCS5A01G503300.1 | Wheat | nucleus | 18.64 | 12.46 |
| TraesCS3A01G058000.1 | Wheat | nucleus | 15.25 | 12.0 |
| TraesCS5A01G503500.1 | Wheat | nucleus | 17.8 | 11.93 |
| TraesCS3A01G442200.1 | Wheat | nucleus | 18.64 | 11.49 |
| TraesCS4A01G263300.2 | Wheat | nucleus | 22.03 | 10.66 |
| TraesCS5A01G503400.1 | Wheat | nucleus | 15.25 | 9.97 |
| TraesCS6A01G071200.1 | Wheat | nucleus | 23.31 | 9.93 |
| TraesCS6A01G071300.1 | Wheat | nucleus | 22.88 | 9.82 |
| TraesCS7A01G311800.1 | Wheat | nucleus | 19.07 | 8.64 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G533900.1 | EnsemblPlantsGene:TraesCS5A01G533900 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF70 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:691027407..691034459
Molecular Weight (calculated)
25871.7 Da
IEP (calculated)
4.527
GRAVY (calculated)
-0.179
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MEISLDFSWE TPSFFELCDA DSMHLPAEDS LSCLYEHGDS TSSPDGANSG LTRRWAGRNM LNERDRRRRL NEKLYAIRGV VPNITKMNKA SIIQDAIAYI
101: EELQEQERQI LAAPGTDGCA AVVQADSTVD DGVGSPPRTT SASSICSPSP HPVQILELEV MQVAEDLAVV NVRHRKAQEA MAKVYGVLES LCLNVITASV
201: TVVSDNIVHN MFIETDGMDC AQTIKEMVKS HSVISM
101: EELQEQERQI LAAPGTDGCA AVVQADSTVD DGVGSPPRTT SASSICSPSP HPVQILELEV MQVAEDLAVV NVRHRKAQEA MAKVYGVLES LCLNVITASV
201: TVVSDNIVHN MFIETDGMDC AQTIKEMVKS HSVISM
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.