Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G331900.1 | Wheat | nucleus | 80.17 | 92.79 |
| TraesCS4D01G329100.1 | Wheat | nucleus | 90.93 | 91.71 |
| TraesCSU01G069400.1 | Wheat | nucleus | 87.54 | 87.78 |
| TraesCS5A01G503500.1 | Wheat | nucleus | 87.25 | 87.5 |
| TraesCS4D01G328900.1 | Wheat | nucleus | 86.12 | 87.36 |
| TraesCS4D01G328800.1 | Wheat | nucleus | 86.97 | 86.97 |
| HORVU4Hr1G080890.1 | Barley | nucleus | 82.72 | 82.25 |
| TraesCS4D01G328700.1 | Wheat | cytosol | 33.71 | 81.51 |
| TraesCS5A01G503400.1 | Wheat | nucleus | 82.15 | 80.33 |
| Os03t0135700-01 | Rice | nucleus | 69.41 | 69.21 |
| TraesCS3A01G057900.1 | Wheat | nucleus | 63.17 | 68.2 |
| TraesCS3A01G058000.1 | Wheat | nucleus | 56.66 | 66.67 |
| EER92904 | Sorghum | nucleus | 67.42 | 63.81 |
| Zm00001d027546_P001 | Maize | nucleus | 64.31 | 61.68 |
| KRH73107 | Soybean | mitochondrion, nucleus | 27.76 | 60.12 |
| GSMUA_Achr7P03930_001 | Banana | nucleus | 38.81 | 57.81 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.11 | 55.27 |
| GSMUA_Achr8P34120_001 | Banana | nucleus | 40.23 | 49.65 |
| KRG99605 | Soybean | cytosol | 20.96 | 46.84 |
| KRH62159 | Soybean | nucleus | 41.36 | 44.24 |
| TraesCS7A01G543300.1 | Wheat | nucleus | 41.08 | 44.07 |
| KRH16156 | Soybean | nucleus | 33.43 | 43.38 |
| KRH39520 | Soybean | nucleus | 40.79 | 43.24 |
| KRH74438 | Soybean | nucleus | 40.79 | 43.11 |
| KRH52870 | Soybean | nucleus | 39.94 | 42.6 |
| KRH45479 | Soybean | nucleus | 38.53 | 42.5 |
| KRH16909 | Soybean | nucleus | 40.23 | 42.26 |
| VIT_18s0001g08040.t01 | Wine grape | nucleus | 39.66 | 41.92 |
| KRH72519 | Soybean | nucleus | 39.09 | 41.44 |
| VIT_00s1312g00010.t01 | Wine grape | nucleus | 38.81 | 41.39 |
| PGSC0003DMT400016360 | Potato | nucleus | 38.53 | 40.24 |
| PGSC0003DMT400026937 | Potato | nucleus | 35.41 | 38.34 |
| Solyc02g091690.2.1 | Tomato | nucleus | 35.69 | 38.3 |
| PGSC0003DMT400078675 | Potato | nucleus | 36.26 | 38.21 |
| Solyc02g063430.2.1 | Tomato | nucleus | 34.56 | 38.01 |
| VIT_17s0000g03550.t01 | Wine grape | nucleus | 34.28 | 37.58 |
| Solyc12g088130.1.1 | Tomato | nucleus | 35.69 | 37.5 |
| AT5G10570.1 | Thale cress | nucleus | 33.14 | 37.14 |
| CDX97027 | Canola | nucleus | 31.16 | 36.91 |
| Bra009022.1-P | Field mustard | nucleus | 31.16 | 36.3 |
| CDX69821 | Canola | nucleus | 30.88 | 35.97 |
| AT5G65640.1 | Thale cress | nucleus | 35.41 | 35.61 |
| CDY08769 | Canola | nucleus | 35.13 | 34.54 |
| Bra024404.1-P | Field mustard | nucleus | 35.13 | 34.54 |
| CDY69978 | Canola | nucleus | 33.71 | 33.24 |
| CDY37835 | Canola | nucleus | 33.43 | 32.96 |
| Bra031852.1-P | Field mustard | nucleus | 33.43 | 32.96 |
| PGSC0003DMT400005209 | Potato | nucleus | 24.08 | 32.95 |
| TraesCS3A01G442200.1 | Wheat | nucleus | 23.8 | 21.93 |
| TraesCS5A01G533200.1 | Wheat | nucleus | 14.16 | 19.53 |
| TraesCS5A01G533900.1 | Wheat | nucleus | 12.46 | 18.64 |
| TraesCS4A01G263300.2 | Wheat | nucleus | 24.08 | 17.42 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 13.31 | 16.91 |
| TraesCS7A01G311800.1 | Wheat | nucleus | 24.93 | 16.89 |
| TraesCS3A01G028200.3 | Wheat | nucleus | 12.75 | 16.61 |
| TraesCS2A01G281200.1 | Wheat | nucleus | 15.01 | 15.68 |
| TraesCS3A01G442600.1 | Wheat | nucleus | 12.18 | 14.73 |
| TraesCS6A01G071300.1 | Wheat | nucleus | 20.11 | 12.91 |
| TraesCS6A01G071200.1 | Wheat | nucleus | 20.11 | 12.82 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G503300.1 | EnsemblPlantsGene:TraesCS5A01G503300 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF4 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr5A:-:668225299..668226727
Molecular Weight (calculated)
38035.8 Da
IEP (calculated)
4.787
GRAVY (calculated)
-0.390
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQLDEQSFL DELMSLRREE ALPPAPAPWQ AYPGSGMMTT SDLLFYGGEG AEASSGTDMA GPFLQQPMAP PPSAPPHRSH EEFNFDCLSE VCNPYRSCVG
101: GVRGHGVVHA AGQALAQYPL HDAMAEDDPS GSNLHRGGGA SSSSVPFVFG AGGARESPEI IRGVFPGAHA RSKLNGGTTS KNLMAERRRR KRLNDRLSML
201: RSIVPKITKM DRTSILGDTI DYVNELTERI KTLEEEIGST PEELNLLNTR KNFSSGSSEE MLTRNSTNFV IEKQGDGETR IDICCATSPG ALISTVSALE
301: VLGLEIEQCV VSCFGDFAMQ ASCSQEEGRS RVTSTDEIKQ ALFTSAGYGG RCL
101: GVRGHGVVHA AGQALAQYPL HDAMAEDDPS GSNLHRGGGA SSSSVPFVFG AGGARESPEI IRGVFPGAHA RSKLNGGTTS KNLMAERRRR KRLNDRLSML
201: RSIVPKITKM DRTSILGDTI DYVNELTERI KTLEEEIGST PEELNLLNTR KNFSSGSSEE MLTRNSTNFV IEKQGDGETR IDICCATSPG ALISTVSALE
301: VLGLEIEQCV VSCFGDFAMQ ASCSQEEGRS RVTSTDEIKQ ALFTSAGYGG RCL
001: MELSTQMNVF EELLVPTKQE TTDNNINNLS FNGGFDHHHH QFFPNGYNID YLCFNNEEED ENTLLYPSSF MDLISQPPPL LLHQPPPLQP LSPPLSSSAT
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
Arabidopsis Description
BHLH93Transcription factor bHLH93 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.