Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G364800.1 | Wheat | nucleus | 94.53 | 94.53 |
| TraesCSU01G138900.1 | Wheat | nucleus | 92.97 | 92.61 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 84.77 | 84.44 |
| TraesCS5A01G533900.1 | Wheat | nucleus | 62.11 | 67.37 |
| TraesCS3A01G028200.3 | Wheat | nucleus | 57.81 | 54.61 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 34.77 | 42.38 |
| KRH37338 | Soybean | nucleus | 37.5 | 39.34 |
| KRH12334 | Soybean | nucleus | 35.94 | 37.86 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 35.94 | 37.7 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 39.06 | 35.97 |
| PGSC0003DMT400010463 | Potato | nucleus | 35.16 | 35.71 |
| Solyc07g018010.2.1 | Tomato | nucleus | 35.16 | 35.57 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 35.94 | 35.38 |
| KRH19109 | Soybean | nucleus | 30.47 | 33.77 |
| CDY38270 | Canola | nucleus | 31.64 | 32.93 |
| Bra002756.1-P | Field mustard | nucleus | 31.64 | 32.93 |
| PGSC0003DMT400044959 | Potato | nucleus | 29.69 | 32.9 |
| Zm00001d004095_P001 | Maize | nucleus | 39.45 | 32.9 |
| Os04t0300600-00 | Rice | cytosol | 37.5 | 32.54 |
| Bra020462.1-P | Field mustard | nucleus | 30.86 | 32.11 |
| CDY47924 | Canola | nucleus | 30.86 | 32.11 |
| CDY42237 | Canola | nucleus | 30.08 | 31.82 |
| Bra006831.1-P | Field mustard | nucleus | 30.47 | 31.71 |
| CDX88610 | Canola | nucleus | 30.47 | 31.71 |
| CDY11882 | Canola | nucleus | 30.08 | 31.3 |
| AT5G57150.4 | Thale cress | nucleus | 30.86 | 29.92 |
| Solyc05g014590.2.1 | Tomato | nucleus | 26.56 | 29.44 |
| Bra024115.1-P | Field mustard | nucleus | 27.73 | 29.1 |
| CDY30182 | Canola | nucleus | 27.73 | 29.1 |
| CDY43542 | Canola | nucleus | 29.69 | 28.9 |
| Bra011152.1-P | Field mustard | nucleus | 27.34 | 28.23 |
| CDX68608 | Canola | nucleus | 28.91 | 28.14 |
| TraesCS3A01G442600.1 | Wheat | nucleus | 32.03 | 28.08 |
| CDY46719 | Canola | nucleus | 28.52 | 27.65 |
| AT4G29930.3 | Thale cress | nucleus | 26.95 | 26.24 |
| CDY52738 | Canola | cytosol | 16.41 | 25.45 |
| KRH02772 | Soybean | nucleus | 33.59 | 25.29 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 28.52 | 24.75 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 11.33 | 18.35 |
| TraesCS2A01G281200.1 | Wheat | nucleus | 20.7 | 15.68 |
| TraesCS7A01G543300.1 | Wheat | nucleus | 19.14 | 14.89 |
| TraesCS3A01G057900.1 | Wheat | nucleus | 18.36 | 14.37 |
| TraesCS5A01G503300.1 | Wheat | nucleus | 19.53 | 14.16 |
| TraesCS3A01G442200.1 | Wheat | nucleus | 21.09 | 14.1 |
| TraesCS5A01G503500.1 | Wheat | nucleus | 18.75 | 13.64 |
| TraesCS3A01G058000.1 | Wheat | nucleus | 15.23 | 13.0 |
| TraesCS5A01G503400.1 | Wheat | nucleus | 16.8 | 11.91 |
| TraesCS4A01G263300.2 | Wheat | nucleus | 21.48 | 11.27 |
| TraesCS6A01G071200.1 | Wheat | nucleus | 23.83 | 11.01 |
| TraesCS6A01G071300.1 | Wheat | nucleus | 23.44 | 10.91 |
| TraesCS7A01G311800.1 | Wheat | nucleus | 21.09 | 10.36 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G533200.1 | EnsemblPlantsGene:TraesCS5A01G533200 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF70 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:690546928..690554048
Molecular Weight (calculated)
27794.0 Da
IEP (calculated)
5.349
GRAVY (calculated)
-0.211
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSDMDVSL DFSWEALVLE LGDADSMHLP AEDSLSGLCD DLTSSPDGAT SRSTKASSLE RKNIINERHR RRMLNEKLYA LRRVVPNITK MDKASIIQDA
101: IAYIEELQEQ ERQILAALRT DSCTAVAKVD DAASTGSNAE DHGVGSSPRK KMRRTTSASS INGAFCSPST HPVQIFELEV TQVAEELTMV SMRHGNSHNA
201: IAKVCEALES LCLKIISTSI TAVASGIVHN MFVEAEGMHG AQTIKEMIQT HSAISM
101: IAYIEELQEQ ERQILAALRT DSCTAVAKVD DAASTGSNAE DHGVGSSPRK KMRRTTSASS INGAFCSPST HPVQIFELEV TQVAEELTMV SMRHGNSHNA
201: IAKVCEALES LCLKIISTSI TAVASGIVHN MFVEAEGMHG AQTIKEMIQT HSAISM
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.