Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024115.1-P | Field mustard | nucleus | 72.62 | 78.28 |
| CDY30182 | Canola | nucleus | 72.62 | 78.28 |
| Bra011152.1-P | Field mustard | nucleus | 72.24 | 76.61 |
| CDY46719 | Canola | nucleus | 74.14 | 73.86 |
| CDX68608 | Canola | nucleus | 73.76 | 73.76 |
| CDY43542 | Canola | nucleus | 73.0 | 73.0 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 41.06 | 68.35 |
| AT5G57150.4 | Thale cress | nucleus | 50.19 | 50.0 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 46.01 | 49.59 |
| Solyc07g018010.2.1 | Tomato | nucleus | 43.73 | 45.45 |
| PGSC0003DMT400010463 | Potato | nucleus | 43.35 | 45.24 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 39.54 | 40.0 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 30.8 | 38.57 |
| PGSC0003DMT400044959 | Potato | nucleus | 33.84 | 38.53 |
| Solyc05g014590.2.1 | Tomato | nucleus | 31.56 | 35.93 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 34.6 | 32.73 |
| TraesCS2D01G270300.1 | Wheat | nucleus | 34.6 | 32.73 |
| TraesCS2D01G270000.2 | Wheat | nucleus | 33.08 | 32.46 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 34.22 | 32.37 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 33.46 | 32.12 |
| Zm00001d025141_P003 | Maize | nucleus | 31.18 | 31.3 |
| Zm00001d024522_P001 | Maize | nucleus | 30.42 | 31.01 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 30.8 | 30.57 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 34.6 | 29.84 |
| EES14602 | Sorghum | nucleus | 31.94 | 29.17 |
| Os04t0301500-01 | Rice | nucleus | 33.46 | 28.39 |
| TraesCSU01G138900.1 | Wheat | nucleus | 27.38 | 28.02 |
| TraesCS5A01G533900.1 | Wheat | nucleus | 25.1 | 27.97 |
| TraesCSU01G138400.2 | Wheat | nucleus | 26.62 | 27.89 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 30.8 | 27.46 |
| HORVU2Hr1G066000.7 | Barley | nucleus | 28.14 | 27.01 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 26.24 | 26.95 |
| TraesCS5A01G533200.1 | Wheat | nucleus | 26.24 | 26.95 |
| TraesCS3A01G028200.3 | Wheat | nucleus | 27.76 | 26.94 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 15.59 | 26.8 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 25.86 | 26.46 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 24.71 | 25.9 |
| Zm00001d004095_P001 | Maize | nucleus | 30.04 | 25.73 |
| EES05013 | Sorghum | nucleus | 26.24 | 24.47 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 29.28 | 23.77 |
| Os04t0300600-00 | Rice | cytosol | 25.86 | 23.05 |
| TraesCS3A01G442600.1 | Wheat | nucleus | 25.48 | 22.95 |
| TraesCS3D01G435200.1 | Wheat | nucleus | 25.86 | 21.52 |
| TraesCS3D01G017700.1 | Wheat | nucleus | 29.66 | 20.97 |
| AT5G10570.1 | Thale cress | nucleus | 23.19 | 19.37 |
| AT2G28160.1 | Thale cress | nucleus | 22.81 | 18.87 |
| AT5G65640.1 | Thale cress | nucleus | 24.33 | 18.23 |
| AT1G12860.1 | Thale cress | nucleus | 19.01 | 11.11 |
| AT2G16910.1 | Thale cress | nucleus | 23.57 | 10.86 |
| AT1G10610.1 | Thale cress | nucleus | 17.87 | 10.66 |
| AT3G26744.1 | Thale cress | nucleus | 19.39 | 10.32 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:829116 | ProteinID:AEE85694.1 | ProteinID:AEE85695.1 | ProteinID:AEE85696.1 |
| ProteinID:AEE85697.1 | EMBL:AF488569 | EMBL:AJ630482 | EMBL:AK117730 | EMBL:AK176201 | EMBL:AK176276 |
| EMBL:AK176674 | EMBL:AK222212 | EMBL:AK228201 | EMBL:AL161575 | ProteinID:ANM67230.1 | ArrayExpress:AT4G29930 |
| EnsemblPlantsGene:AT4G29930 | RefSeq:AT4G29930 | TAIR:AT4G29930 | RefSeq:AT4G29930-TAIR-G | EnsemblPlants:AT4G29930.3 | TAIR:AT4G29930.3 |
| EMBL:AY568654 | Unigene:At.44068 | EMBL:BT005869 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | RefSeq:NP_001031752.1 | RefSeq:NP_001078471.1 | RefSeq:NP_001119080.1 | RefSeq:NP_001329072.1 | RefSeq:NP_194722.2 |
| PFAM:PF00010 | PO:PO:0000293 | PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF26 | UniProt:Q700E3 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0000352973 | InterPro:bHLH_dom | SEG:seg | : |
Description
BHLH27Transcription factor bHLH27 [Source:UniProtKB/Swiss-Prot;Acc:Q700E3]
Coordinates
chr4:+:14643994..14647379
Molecular Weight (calculated)
30281.9 Da
IEP (calculated)
4.837
GRAVY (calculated)
-0.404
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDLDHEYKN YWETTMFFQN QELEFDSWPM EEAFSGSGES SSPDGAATSP ASSKNVVSER NRRQKLNQRL FALRSVVPNI SKLDKASVIK DSIDYMQELI
101: DQEKTLEAEI RELESRSTLL ENPVRDYDCN FAETHLQDFS DNNDMRSKKF KQMDYSTRVQ HYPIEVLEMK VTWMGEKTVV VCITCSKKRE TMVQLCKVLE
201: SLNLNILTTN FSSFTSRLST TLFLQVTLSL SPSLISLFGN VITSTNYKIL NASREYCTCL VLV
101: DQEKTLEAEI RELESRSTLL ENPVRDYDCN FAETHLQDFS DNNDMRSKKF KQMDYSTRVQ HYPIEVLEMK VTWMGEKTVV VCITCSKKRE TMVQLCKVLE
201: SLNLNILTTN FSSFTSRLST TLFLQVTLSL SPSLISLFGN VITSTNYKIL NASREYCTCL VLV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.