Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43542 | Canola | nucleus | 95.16 | 89.73 |
| CDX68608 | Canola | nucleus | 93.15 | 87.83 |
| Bra024115.1-P | Field mustard | nucleus | 78.63 | 79.92 |
| AT4G29930.3 | Thale cress | nucleus | 76.61 | 72.24 |
| Bra002756.1-P | Field mustard | nucleus | 52.42 | 52.85 |
| Bra020462.1-P | Field mustard | nucleus | 51.61 | 52.03 |
| Bra006831.1-P | Field mustard | nucleus | 50.81 | 51.22 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 48.39 | 49.18 |
| Solyc07g018010.2.1 | Tomato | nucleus | 44.35 | 43.48 |
| PGSC0003DMT400010463 | Potato | nucleus | 43.95 | 43.25 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 41.94 | 40.0 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 32.66 | 38.57 |
| PGSC0003DMT400044959 | Potato | nucleus | 35.08 | 37.66 |
| Solyc05g014590.2.1 | Tomato | nucleus | 33.06 | 35.5 |
| TraesCS2D01G270300.1 | Wheat | nucleus | 37.1 | 33.09 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 37.1 | 33.09 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 37.1 | 33.09 |
| TraesCS2D01G270000.2 | Wheat | nucleus | 34.27 | 31.72 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 34.68 | 31.39 |
| Zm00001d025141_P003 | Maize | nucleus | 32.66 | 30.92 |
| Zm00001d024522_P001 | Maize | nucleus | 31.05 | 29.84 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 36.69 | 29.84 |
| TraesCSU01G138400.2 | Wheat | nucleus | 29.44 | 29.08 |
| TraesCS5A01G533900.1 | Wheat | nucleus | 27.42 | 28.81 |
| EES14602 | Sorghum | nucleus | 33.06 | 28.47 |
| TraesCSU01G138900.1 | Wheat | nucleus | 29.44 | 28.4 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 30.24 | 28.3 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 33.06 | 27.8 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 16.94 | 27.45 |
| Os04t0301500-01 | Rice | nucleus | 34.27 | 27.42 |
| TraesCS5A01G533200.1 | Wheat | nucleus | 28.23 | 27.34 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 28.23 | 27.34 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 27.42 | 27.09 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 27.82 | 26.85 |
| HORVU2Hr1G066000.7 | Barley | nucleus | 29.03 | 26.28 |
| Os04t0300600-00 | Rice | cytosol | 31.05 | 26.1 |
| Zm00001d004095_P001 | Maize | nucleus | 31.85 | 25.73 |
| TraesCS3A01G028200.3 | Wheat | nucleus | 27.02 | 24.72 |
| EES05013 | Sorghum | nucleus | 27.82 | 24.47 |
| TraesCS3A01G442600.1 | Wheat | nucleus | 27.42 | 23.29 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 29.84 | 22.84 |
| TraesCS3D01G435200.1 | Wheat | nucleus | 27.42 | 21.52 |
| TraesCS3D01G017700.1 | Wheat | nucleus | 29.44 | 19.62 |
| Bra034392.1-P | Field mustard | nucleus | 25.0 | 19.62 |
| Bra011972.1-P | Field mustard | nucleus | 24.6 | 19.3 |
| Bra000495.1-P | Field mustard | nucleus | 23.79 | 19.16 |
| Bra009022.1-P | Field mustard | nucleus | 22.18 | 18.15 |
| Bra031852.1-P | Field mustard | nucleus | 25.4 | 17.6 |
| Bra024404.1-P | Field mustard | nucleus | 25.0 | 17.27 |
| Bra031723.1-P | Field mustard | cytosol | 20.56 | 13.21 |
| Bra019794.1-P | Field mustard | nucleus | 20.97 | 12.24 |
| Bra019914.1-P | Field mustard | cytosol | 20.16 | 11.99 |
| Bra016749.1-P | Field mustard | nucleus | 20.16 | 11.55 |
| Bra032947.1-P | Field mustard | nucleus | 19.76 | 11.09 |
| Bra034246.1-P | Field mustard | nucleus | 18.15 | 10.77 |
| Bra002004.1-P | Field mustard | nucleus | 24.6 | 10.76 |
| Bra025226.1-P | Field mustard | nucleus | 20.56 | 10.26 |
| Bra013041.1-P | Field mustard | nucleus | 23.39 | 10.21 |
Protein Annotations
| EnsemblPlants:Bra011152.1 | EnsemblPlants:Bra011152.1-P | EnsemblPlantsGene:Bra011152 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF26 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000254714E | UniProt:M4D3U8 | MapMan:15.5.32 | : |
Description
AT4G29930 (E=7e-080) | basic helix-loop-helix (bHLH) family protein
Coordinates
chrA01:-:3650570..3651846
Molecular Weight (calculated)
28391.8 Da
IEP (calculated)
5.194
GRAVY (calculated)
-0.431
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDLDHEYKN YWETTMFFQN QELEFDSWPL EEAFSGSGES SSPDGAATSP VTSKNVASER KRREKLNQRL FALRSVVPNI SKLDKASIIR DSINYLQDLI
101: DQEKKLEAEI RELESRSMLL DNPTRDYDCI NNFPGNQQQD LSGINAMRSK KSRQMDYNTF GSSITRVHNH SLIEVLEMTV TCMGEKTVVV CITCSKKRET
201: MLQLCKLLES LNLNILTTNF SSFSSRLSTT LFLQVSPLSL FFLQLLSP
101: DQEKKLEAEI RELESRSMLL DNPTRDYDCI NNFPGNQQQD LSGINAMRSK KSRQMDYNTF GSSITRVHNH SLIEVLEMTV TCMGEKTVVV CITCSKKRET
201: MLQLCKLLES LNLNILTTNF SSFSSRLSTT LFLQVSPLSL FFLQLLSP
001: MEDLDHEYKN YWETTMFFQN QELEFDSWPM EEAFSGSGES SSPDGAATSP ASSKNVVSER NRRQKLNQRL FALRSVVPNI SKLDKASVIK DSIDYMQELI
101: DQEKTLEAEI RELESRSTLL ENPVRDYDCN FAETHLQDFS DNNDMRSKKF KQMDYSTRVQ HYPIEVLEMK VTWMGEKTVV VCITCSKKRE TMVQLCKVLE
201: SLNLNILTTN FSSFTSRLST TLFLQVTLSL SPSLISLFGN VITSTNYKIL NASREYCTCL VLV
101: DQEKTLEAEI RELESRSTLL ENPVRDYDCN FAETHLQDFS DNNDMRSKKF KQMDYSTRVQ HYPIEVLEMK VTWMGEKTVV VCITCSKKRE TMVQLCKVLE
201: SLNLNILTTN FSSFTSRLST TLFLQVTLSL SPSLISLFGN VITSTNYKIL NASREYCTCL VLV
Arabidopsis Description
BHLH27Transcription factor bHLH27 [Source:UniProtKB/Swiss-Prot;Acc:Q700E3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.