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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY38270 Canola nucleus 100.0 100.0
Bra020462.1-P Field mustard nucleus 93.5 93.5
Bra006831.1-P Field mustard nucleus 89.43 89.43
AT5G57150.4 Thale cress nucleus 82.52 76.89
VIT_11s0052g00100.t01 Wine grape nucleus 63.41 63.93
KRH37338 Soybean nucleus 59.76 60.25
KRH12334 Soybean nucleus 58.94 59.67
Bra024115.1-P Field mustard nucleus 55.69 56.15
PGSC0003DMT400010463 Potato nucleus 54.06 52.78
Solyc07g018010.2.1 Tomato nucleus 54.06 52.57
Bra011152.1-P Field mustard nucleus 52.85 52.42
KRH19109 Soybean nucleus 49.19 52.38
PGSC0003DMT400044959 Potato nucleus 46.75 49.78
Solyc05g014590.2.1 Tomato nucleus 44.31 47.19
GSMUA_Achr7P16000_001 Banana nucleus 49.59 46.92
GSMUA_Achr6P30900_001 Banana nucleus 37.8 44.29
TraesCS2D01G270300.1 Wheat nucleus 45.94 40.65
TraesCS2A01G271700.1 Wheat nucleus 45.53 40.29
TraesCS2B01G289900.1 Wheat nucleus 45.12 39.93
KRH02772 Soybean nucleus 54.47 39.41
Zm00001d025141_P003 Maize nucleus 41.87 39.31
Zm00001d024522_P001 Maize nucleus 41.06 39.15
HORVU2Hr1G066100.1 Barley cytosol, nucleus 45.94 37.05
EES14602 Sorghum nucleus 42.28 36.11
TraesCS2D01G270000.2 Wheat nucleus 39.02 35.82
TraesCS2B01G289700.2 Wheat nucleus 39.02 35.04
Os04t0301500-01 Rice nucleus 42.68 33.87
TraesCS5A01G533900.1 Wheat nucleus 30.89 32.2
HORVU2Hr1G066090.2 Barley cytosol 19.92 32.03
TraesCS5A01G533200.1 Wheat nucleus 32.93 31.64
GSMUA_Achr4P12700_001 Banana nucleus 37.8 31.53
TraesCS3B01G018400.1 Wheat nucleus 33.74 31.32
TraesCSU01G138400.2 Wheat nucleus 31.71 31.08
TraesCS4B01G364800.1 Wheat nucleus 32.11 30.86
EES05013 Sorghum nucleus 35.37 30.85
TraesCSU01G138900.1 Wheat nucleus 32.11 30.74
HORVU4Hr1G087590.1 Barley nucleus 32.11 30.74
HORVU4Hr1G087610.1 Barley nucleus 30.89 30.28
Os04t0300600-00 Rice cytosol 35.37 29.49
Zm00001d004095_P001 Maize nucleus 36.59 29.32
TraesCS3A01G028200.3 Wheat nucleus 31.3 28.41
TraesCS3A01G442600.1 Wheat nucleus 32.52 27.4
HORVU2Hr1G066000.7 Barley nucleus 29.27 26.28
TraesCS3D01G435200.1 Wheat nucleus 33.74 26.27
HORVU3Hr1G005500.3 Barley cytosol, nucleus 33.33 25.31
TraesCS3D01G017700.1 Wheat nucleus 33.33 22.04
Bra034392.1-P Field mustard nucleus 25.61 19.94
Bra000495.1-P Field mustard nucleus 24.8 19.81
Bra011972.1-P Field mustard nucleus 24.39 18.99
Bra031852.1-P Field mustard nucleus 23.58 16.2
Bra024404.1-P Field mustard nucleus 23.17 15.88
Bra009022.1-P Field mustard nucleus 19.11 15.51
Bra031723.1-P Field mustard cytosol 21.54 13.73
Bra019794.1-P Field mustard nucleus 23.58 13.65
Bra019914.1-P Field mustard cytosol 22.36 13.19
Bra016749.1-P Field mustard nucleus 22.36 12.7
Bra034246.1-P Field mustard nucleus 21.54 12.68
Bra032947.1-P Field mustard nucleus 22.36 12.44
Bra025226.1-P Field mustard nucleus 23.17 11.47
Bra013041.1-P Field mustard nucleus 25.61 11.09
Bra002004.1-P Field mustard nucleus 25.2 10.93
Protein Annotations
EnsemblPlants:Bra002756.1EnsemblPlants:Bra002756.1-PEnsemblPlantsGene:Bra002756Gene3D:4.10.280.10GO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638InterPro:bHLH_dom
ncoils:CoilPANTHER:PTHR31945PANTHER:PTHR31945:SF26PFAM:PF00010PFscan:PS50888SEG:seg
SMART:SM00353SUPFAM:SSF47459UniParc:UPI0002544DC7UniProt:M4CEX4MapMan:15.5.32:
Description
AT5G57150 (E=5e-107) | basic helix-loop-helix (bHLH) family protein
Coordinates
chrA10:+:7836472..7839238
Molecular Weight (calculated)
27892.8 Da
IEP (calculated)
4.359
GRAVY (calculated)
-0.443
Length
246 amino acids
Sequence
(BLAST)
001: MDNVDQEFNN YWETNSFLQN EDFEYDSWPL EEAISGSYDS SSPDGAASSP ASKNIVSERN RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AISYIQGLQY
101: EESKLEAEIR ELESTPKSSL SFSKDFDRDL LVPVTSKKMK QLDSGPSRSL IEVLELKVTF MGERTVVVNV TCNKRTDTMV KLCEVFESLN LKIITSNLNS
201: FSGMIFNTVF VEAEEEEQEV VRLKIETGIG AYNETQSPTL SIDSLY
Best Arabidopsis Sequence Match ( AT5G57150.1 )
(BLAST)
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.