Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98033 | Canola | nucleus | 43.06 | 98.92 |
| CDY19416 | Canola | nucleus | 42.82 | 98.38 |
| Bra016749.1-P | Field mustard | nucleus | 75.29 | 73.9 |
| AT1G12860.1 | Thale cress | nucleus | 77.41 | 73.11 |
| GSMUA_Achr6P08070_001 | Banana | nucleus | 36.71 | 71.56 |
| Bra032947.1-P | Field mustard | nucleus | 61.18 | 58.82 |
| Bra034246.1-P | Field mustard | nucleus | 56.47 | 57.42 |
| Bra025226.1-P | Field mustard | nucleus | 66.12 | 56.54 |
| VIT_14s0068g01200.t01 | Wine grape | nucleus | 58.12 | 45.91 |
| KRG94685 | Soybean | nucleus | 45.88 | 45.77 |
| EES04142 | Sorghum | nucleus | 39.29 | 44.41 |
| TraesCS3B01G476000.1 | Wheat | nucleus | 38.82 | 43.54 |
| TraesCS3D01G434900.1 | Wheat | nucleus | 38.82 | 43.31 |
| HORVU3Hr1G096460.5 | Barley | nucleus | 38.59 | 43.27 |
| TraesCS3A01G442200.1 | Wheat | nucleus | 38.59 | 42.82 |
| Os01t0928000-01 | Rice | nucleus | 37.88 | 42.26 |
| KRH06841 | Soybean | nucleus | 44.47 | 42.0 |
| GSMUA_Achr10P... | Banana | nucleus | 49.41 | 41.26 |
| KRH08406 | Soybean | nucleus | 41.88 | 40.09 |
| Zm00001d042263_P001 | Maize | nucleus | 39.29 | 39.95 |
| Solyc03g118310.2.1 | Tomato | nucleus | 47.06 | 37.88 |
| PGSC0003DMT400036951 | Potato | nucleus | 47.29 | 36.48 |
| Bra009022.1-P | Field mustard | nucleus | 20.71 | 29.04 |
| Bra024404.1-P | Field mustard | nucleus | 23.76 | 28.13 |
| Bra031852.1-P | Field mustard | nucleus | 23.53 | 27.93 |
| Bra002756.1-P | Field mustard | nucleus | 13.65 | 23.58 |
| Bra020462.1-P | Field mustard | nucleus | 12.94 | 22.36 |
| Bra006831.1-P | Field mustard | nucleus | 12.24 | 21.14 |
| Bra011152.1-P | Field mustard | nucleus | 12.24 | 20.97 |
| Bra024115.1-P | Field mustard | nucleus | 11.76 | 20.49 |
| Bra034392.1-P | Field mustard | nucleus | 14.12 | 18.99 |
| Bra011972.1-P | Field mustard | nucleus | 13.65 | 18.35 |
| Bra000495.1-P | Field mustard | nucleus | 12.94 | 17.86 |
| Bra002004.1-P | Field mustard | nucleus | 20.24 | 15.17 |
| Bra013041.1-P | Field mustard | nucleus | 20.0 | 14.96 |
| Bra019914.1-P | Field mustard | cytosol | 12.0 | 12.23 |
| Bra031723.1-P | Field mustard | cytosol | 11.06 | 12.18 |
Protein Annotations
| EnsemblPlants:Bra019794.1 | EnsemblPlants:Bra019794.1-P | EnsemblPlantsGene:Bra019794 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF13 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000253EC6D | UniProt:M4DTF1 | MapMan:15.5.32 | MapMan:26.4.3.4.1 | : |
Description
AT1G12860 (E=5e-122) SCRM2, ICE2 | SCRM2 (SCREAM 2); DNA binding / transcription factor
Coordinates
chrA06:-:4377462..4380428
Molecular Weight (calculated)
47390.0 Da
IEP (calculated)
5.704
GRAVY (calculated)
-0.550
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGDGVWLDH DAGERSQAGY NDEPVPWVRN PEENWFNNSQ PHDDSQNEFR FNGGGFPLNP SENLLLLLQQ SIDSSSPFQH FTLDATTPQQ QQQQQESFLA
101: TKACIASLLT VPTTTNKRQL NQIPNSMSFP VMTSPPPDFL SSRSCNVFSP LEFEGLASGV FENRAKVLKP LEILPSSGSE LTLFQKRAAM RESSSSKMCN
201: SDSSSSEMRR EIGDETSPGI VDIFNYESDE HNHNKGKKKG MPAKNLMAER RRRKKLNDRL YMLRSVVPKI SKMDRASILG DAIDYLKELL QRINDLHTEL
301: ESTPSSSSGL TPSPQMLPYR VKEELCPSSS SLPSAKGEQA RIEVKLREGK AVNIHMFCGR RPGLLLSTMR ALDDLGLDVQ QAVISCFNGF ALDVFRAEQC
401: QEGHEVFPEQ IKAVLLDTAG YSGLL
101: TKACIASLLT VPTTTNKRQL NQIPNSMSFP VMTSPPPDFL SSRSCNVFSP LEFEGLASGV FENRAKVLKP LEILPSSGSE LTLFQKRAAM RESSSSKMCN
201: SDSSSSEMRR EIGDETSPGI VDIFNYESDE HNHNKGKKKG MPAKNLMAER RRRKKLNDRL YMLRSVVPKI SKMDRASILG DAIDYLKELL QRINDLHTEL
301: ESTPSSSSGL TPSPQMLPYR VKEELCPSSS SLPSAKGEQA RIEVKLREGK AVNIHMFCGR RPGLLLSTMR ALDDLGLDVQ QAVISCFNGF ALDVFRAEQC
401: QEGHEVFPEQ IKAVLLDTAG YSGLL
001: MNSDGVWLDG SGESPEVNNG EAASWVRNPD EDWFNNPPPP QHTNQNDFRF NGGFPLNPSE NLLLLLQQSI DSSSSSSPLL HPFTLDAASQ QQQQQQQQQE
101: QSFLATKACI VSLLNVPTIN NNTFDDFGFD SGFLGQQFHG NHQSPNSMNF TGLNHSVPDF LPAPENSSGS CGLSPLFSNR AKVLKPLQVM ASSGSQPTLF
201: QKRAAMRQSS SSKMCNSESS SEMRKSSYER EIDDTSTGII DISGLNYESD DHNTNNNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS
301: ILGDAIDYLK ELLQRINDLH TELESTPPSS SSLHPLTPTP QTLSYRVKEE LCPSSSLPSP KGQQPRVEVR LREGKAVNIH MFCGRRPGLL LSTMRALDNL
401: GLDVQQAVIS CFNGFALDVF RAEQCQEDHD VLPEQIKAVL LDTAGYAGLV
101: QSFLATKACI VSLLNVPTIN NNTFDDFGFD SGFLGQQFHG NHQSPNSMNF TGLNHSVPDF LPAPENSSGS CGLSPLFSNR AKVLKPLQVM ASSGSQPTLF
201: QKRAAMRQSS SSKMCNSESS SEMRKSSYER EIDDTSTGII DISGLNYESD DHNTNNNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS
301: ILGDAIDYLK ELLQRINDLH TELESTPPSS SSLHPLTPTP QTLSYRVKEE LCPSSSLPSP KGQQPRVEVR LREGKAVNIH MFCGRRPGLL LSTMRALDNL
401: GLDVQQAVIS CFNGFALDVF RAEQCQEDHD VLPEQIKAVL LDTAGYAGLV
Arabidopsis Description
SCRM2Transcription factor SCREAM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.