Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
23083684
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P08070_001 | Banana | nucleus | 43.04 | 75.23 |
| CDX98033 | Canola | nucleus | 36.48 | 75.14 |
| CDY19416 | Canola | nucleus | 36.22 | 74.59 |
| EES04142 | Sorghum | nucleus | 72.18 | 73.14 |
| TraesCS3A01G442200.1 | Wheat | nucleus | 73.23 | 72.85 |
| TraesCS3D01G434900.1 | Wheat | nucleus | 72.44 | 72.44 |
| TraesCS3B01G476000.1 | Wheat | nucleus | 71.92 | 72.3 |
| HORVU3Hr1G096460.5 | Barley | nucleus | 71.39 | 71.77 |
| Zm00001d042263_P001 | Maize | nucleus | 72.18 | 65.79 |
| KRG94685 | Soybean | nucleus | 45.93 | 41.08 |
| Bra034246.1-P | Field mustard | nucleus | 43.31 | 39.47 |
| CDY28529 | Canola | nucleus | 45.41 | 39.41 |
| Bra032947.1-P | Field mustard | nucleus | 45.41 | 39.14 |
| KRH06841 | Soybean | nucleus | 45.67 | 38.67 |
| CDY21073 | Canola | nucleus | 43.04 | 38.05 |
| AT1G12860.1 | Thale cress | nucleus | 44.88 | 38.0 |
| Bra019794.1-P | Field mustard | nucleus | 42.26 | 37.88 |
| Bra016749.1-P | Field mustard | nucleus | 43.04 | 37.88 |
| KRH08406 | Soybean | nucleus | 43.57 | 37.39 |
| CDY34601 | Canola | nucleus | 43.04 | 36.94 |
| CDY48974 | Canola | nucleus | 45.93 | 36.53 |
| VIT_14s0068g01200.t01 | Wine grape | nucleus | 50.66 | 35.87 |
| AT3G26744.1 | Thale cress | nucleus | 46.46 | 35.83 |
| Bra025226.1-P | Field mustard | nucleus | 46.19 | 35.41 |
| GSMUA_Achr10P... | Banana | nucleus | 47.24 | 35.36 |
| Os11t0523700-01 | Rice | nucleus | 46.72 | 33.97 |
| Solyc03g118310.2.1 | Tomato | nucleus | 45.67 | 32.95 |
| PGSC0003DMT400036951 | Potato | nucleus | 44.09 | 30.49 |
| Os10t0544200-01 | Rice | nucleus | 25.46 | 25.53 |
| Os03t0135700-01 | Rice | nucleus | 23.62 | 25.42 |
| Os04t0301500-01 | Rice | nucleus | 15.49 | 19.03 |
| Os04t0300600-00 | Rice | cytosol | 13.12 | 16.95 |
| Os04t0381700-00 | Rice | nucleus | 13.65 | 14.77 |
| Os02t0120500-01 | Rice | nucleus | 18.64 | 12.86 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.4.3.4.1 | Gene3D:4.10.280.10 | EMBL:AK102594 | ProteinID:BAD88163.1 | ProteinID:BAD88203.1 |
| ProteinID:BAF07186.1 | ProteinID:BAS76009.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | EMBL:HQ858878 | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os01g0928000 |
| EnsemblPlants:Os01t0928000-01 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF2 | UniProt:Q5JK17 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00004C2BB5 | InterPro:bHLH_dom | SEG:seg | : |
Description
basic helix-loop-helix protein 001, Inducer of CBF expression 2Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (AtbHLH116). (Os01t0928000-01)
Coordinates
chr1:-:40714216..40717112
Molecular Weight (calculated)
39779.1 Da
IEP (calculated)
6.143
GRAVY (calculated)
-0.228
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEAEAAAAA AKMDELAGGG GGGGGDWSYL AADALAAASF TAFPFHHHHH HHHRDVLSAS TPSSLLLNMD AATAAAMFDF QAAFPSSSVP PPPPTTTAAL
101: PPFHDFASSN PFDDAPPPFL APPGQKLGFL GPPGGAFGGG MGWDDDDEIE QSVDASSMGV SASLENAAPV AAGGGGGGGG GGGRGKKKGM PAKNLMAERR
201: RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLQ RINDLHNELE SAPSSSLTGP SSASFHPSTP TLQTFPGRVK EELCPTSFPS PSGQQATVEV
301: RMREGHAVNI HMFCARRPGI LMSTLRALDS LGLGIEQAVI SCFNGFAMDV FRAEQCRDGP GLGPEEIKTV LLHSAGLQNA M
101: PPFHDFASSN PFDDAPPPFL APPGQKLGFL GPPGGAFGGG MGWDDDDEIE QSVDASSMGV SASLENAAPV AAGGGGGGGG GGGRGKKKGM PAKNLMAERR
201: RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLQ RINDLHNELE SAPSSSLTGP SSASFHPSTP TLQTFPGRVK EELCPTSFPS PSGQQATVEV
301: RMREGHAVNI HMFCARRPGI LMSTLRALDS LGLGIEQAVI SCFNGFAMDV FRAEQCRDGP GLGPEEIKTV LLHSAGLQNA M
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
Arabidopsis Description
SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.