Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92904 | Sorghum | nucleus | 79.38 | 75.34 |
| TraesCS4B01G331900.1 | Wheat | nucleus | 62.15 | 72.13 |
| TraesCS4D01G328700.1 | Wheat | cytosol | 29.66 | 71.92 |
| Zm00001d027546_P001 | Maize | nucleus | 74.01 | 71.2 |
| TraesCS4D01G328900.1 | Wheat | nucleus | 68.93 | 70.11 |
| TraesCS4B01G332000.1 | Wheat | nucleus | 68.64 | 70.03 |
| TraesCS4D01G329100.1 | Wheat | nucleus | 69.21 | 70.0 |
| TraesCS4D01G329000.2 | Wheat | nucleus | 69.21 | 69.41 |
| TraesCS5A01G503300.1 | Wheat | nucleus | 69.21 | 69.41 |
| TraesCSU01G069400.1 | Wheat | nucleus | 68.93 | 69.32 |
| TraesCS5A01G503500.1 | Wheat | nucleus | 67.51 | 67.9 |
| TraesCS4D01G328800.1 | Wheat | nucleus | 67.51 | 67.71 |
| HORVU4Hr1G080890.1 | Barley | nucleus | 66.95 | 66.76 |
| TraesCS3A01G057900.1 | Wheat | nucleus | 61.3 | 66.36 |
| TraesCS5A01G503400.1 | Wheat | nucleus | 65.82 | 64.54 |
| TraesCS3A01G058000.1 | Wheat | nucleus | 54.52 | 64.33 |
| TraesCSU01G069300.1 | Wheat | nucleus | 63.84 | 64.2 |
| TraesCS3D01G058100.1 | Wheat | nucleus | 52.26 | 62.5 |
| GSMUA_Achr7P03930_001 | Banana | nucleus | 41.81 | 62.45 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.53 | 62.03 |
| KRH73107 | Soybean | mitochondrion, nucleus | 28.53 | 61.96 |
| TraesCS3B01G070400.1 | Wheat | nucleus | 53.11 | 61.64 |
| GSMUA_Achr8P34120_001 | Banana | nucleus | 45.48 | 56.29 |
| KRG99605 | Soybean | cytosol | 22.88 | 51.27 |
| Os10t0544200-01 | Rice | nucleus | 52.26 | 48.68 |
| VIT_18s0001g08040.t01 | Wine grape | nucleus | 45.2 | 47.9 |
| KRH62159 | Soybean | nucleus | 43.79 | 46.97 |
| KRH39520 | Soybean | nucleus | 44.07 | 46.85 |
| KRH74438 | Soybean | nucleus | 43.79 | 46.41 |
| KRH52870 | Soybean | nucleus | 42.66 | 45.62 |
| VIT_00s1312g00010.t01 | Wine grape | nucleus | 42.66 | 45.62 |
| KRH16909 | Soybean | nucleus | 42.94 | 45.24 |
| KRH16156 | Soybean | nucleus | 34.75 | 45.22 |
| KRH72519 | Soybean | nucleus | 42.09 | 44.74 |
| KRH45479 | Soybean | nucleus | 40.4 | 44.69 |
| PGSC0003DMT400016360 | Potato | nucleus | 40.96 | 42.9 |
| Solyc02g063430.2.1 | Tomato | nucleus | 38.42 | 42.37 |
| PGSC0003DMT400026937 | Potato | nucleus | 38.98 | 42.33 |
| Solyc12g088130.1.1 | Tomato | nucleus | 39.83 | 41.96 |
| AT5G10570.1 | Thale cress | nucleus | 37.29 | 41.9 |
| Solyc02g091690.2.1 | Tomato | nucleus | 38.7 | 41.64 |
| PGSC0003DMT400078675 | Potato | nucleus | 38.7 | 40.9 |
| VIT_17s0000g03550.t01 | Wine grape | nucleus | 37.01 | 40.68 |
| CDX97027 | Canola | nucleus | 33.05 | 39.26 |
| AT5G65640.1 | Thale cress | nucleus | 38.7 | 39.03 |
| Bra009022.1-P | Field mustard | nucleus | 33.33 | 38.94 |
| CDY08769 | Canola | nucleus | 38.98 | 38.44 |
| Bra024404.1-P | Field mustard | nucleus | 38.98 | 38.44 |
| CDX69821 | Canola | nucleus | 32.77 | 38.28 |
| CDY69978 | Canola | nucleus | 38.14 | 37.71 |
| PGSC0003DMT400005209 | Potato | nucleus | 27.4 | 37.6 |
| CDY37835 | Canola | nucleus | 37.85 | 37.43 |
| Bra031852.1-P | Field mustard | nucleus | 37.85 | 37.43 |
| Os01t0928000-01 | Rice | nucleus | 25.42 | 23.62 |
| Os04t0300600-00 | Rice | cytosol | 14.12 | 16.95 |
| Os11t0523700-01 | Rice | nucleus | 24.86 | 16.79 |
| Os04t0381700-00 | Rice | nucleus | 14.97 | 15.06 |
| Os04t0301500-01 | Rice | nucleus | 12.43 | 14.19 |
| Os02t0120500-01 | Rice | nucleus | 18.93 | 12.14 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:4331538 | ProteinID:ABF93851.1 | EMBL:AK060029 | ProteinID:BAS82180.1 |
| ncoils:Coil | ProteinID:EEE58284.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os03g0135700 | EnsemblPlants:Os03t0135700-01 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF4 | UniProt:Q10S44 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0000DB4492 | RefSeq:XP_015629094.1 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
Rac Immunity1, Rac Immunity 1, basic helix-loop-helix protein 003Transcriptional activator Rb homolog (Fragment). (Os03t0135700-01);Transcriptional activator Rb homolog (Fragment). (Os03t0135700-02)
Coordinates
chr3:-:1983566..1985563
Molecular Weight (calculated)
37891.9 Da
IEP (calculated)
4.581
GRAVY (calculated)
-0.415
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MELDEESFLD ELMSLRRDGS APWQAPPYPG GGGGGGGGGM MMSDLLFYGG DGGSAEARGG MDASPFQELA SMAAPPPQHP HEEFNFDCLS EVCNPYRSCG
101: AQLVPSEAAS QTQTQLTPLR DAMVAEEETS GDKALLHGGG GSSSPTFMFG GGAGESSEMM AGIRGVGGGV HPRSKLHGTP SKNLMAERRR RKRLNDRLSM
201: LRSIVPKISK MDRTSILGDT IDYVKELTER IKTLEEEIGV TPEELDLLNT MKDSSSGNNN EMLVRNSTKF DVENRGSGNT RIEICCPANP GVLLSTVSAL
301: EVLGLEIEQC VVSCFSDFGM QASCLQEDGK RQVVSTDEIK QTLFRSAGYG GRCL
101: AQLVPSEAAS QTQTQLTPLR DAMVAEEETS GDKALLHGGG GSSSPTFMFG GGAGESSEMM AGIRGVGGGV HPRSKLHGTP SKNLMAERRR RKRLNDRLSM
201: LRSIVPKISK MDRTSILGDT IDYVKELTER IKTLEEEIGV TPEELDLLNT MKDSSSGNNN EMLVRNSTKF DVENRGSGNT RIEICCPANP GVLLSTVSAL
301: EVLGLEIEQC VVSCFSDFGM QASCLQEDGK RQVVSTDEIK QTLFRSAGYG GRCL
001: MELSTQMNVF EELLVPTKQE TTDNNINNLS FNGGFDHHHH QFFPNGYNID YLCFNNEEED ENTLLYPSSF MDLISQPPPL LLHQPPPLQP LSPPLSSSAT
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
Arabidopsis Description
BHLH93Transcription factor bHLH93 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.