Factsheet for Os02t0120500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G095600.1	Wheat	nucleus	60.51	60.4
TraesCS6D01G069300.1	Wheat	nucleus	60.69	60.14
TraesCS6A01G071300.1	Wheat	nucleus	59.78	60.0
HORVU6Hr1G012760.1	Barley	nucleus	60.33	59.68
HORVU6Hr1G012730.1	Barley	nucleus	60.33	59.68
TraesCS6A01G071200.1	Wheat	nucleus	59.78	59.57
TraesCS6D01G069400.1	Wheat	nucleus	59.78	59.57
TraesCS6B01G095700.1	Wheat	nucleus	59.42	59.31
KXG29315	Sorghum	nucleus	59.96	57.97
Zm00001d053895_P001	Maize	nucleus	58.15	51.36
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	22.83	43.0
GSMUA_Achr3P00640_001	Banana	nucleus	22.46	41.61
KRH36073	Soybean	nucleus	33.88	32.75
CDY02227	Canola	nucleus	33.7	32.75
Bra013041.1-P	Field mustard	nucleus	33.7	32.75
CDY31399	Canola	nucleus	33.33	32.45
AT2G16910.1	Thale cress	nucleus	33.51	32.4
GSMUA_Achr1P07330_001	Banana	nucleus	24.64	32.23
CDX71316	Canola	nucleus	33.15	32.22
Bra002004.1-P	Field mustard	nucleus	32.97	32.1
CDX89760	Canola	nucleus	32.61	31.69
KRG90676	Soybean	extracellular, vacuole	32.97	31.54
VIT_01s0127g00860.t01	Wine grape	nucleus	34.42	31.05
Solyc08g062780.1.1	Tomato	nucleus	33.51	31.04
PGSC0003DMT400021165	Potato	nucleus	24.46	31.03
VIT_03s0038g02540.t01	Wine grape	nucleus	34.96	29.74
Os04t0301500-01	Rice	nucleus	11.96	21.29
Os04t0381700-00	Rice	nucleus	12.68	19.89
Os04t0300600-00	Rice	cytosol	10.14	18.98
Os03t0135700-01	Rice	nucleus	12.14	18.93
Os01t0928000-01	Rice	nucleus	12.86	18.64
Os10t0544200-01	Rice	nucleus	11.78	17.11
Os11t0523700-01	Rice	nucleus	15.4	16.22

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:4328113	ProteinID:BAD07594.1	ProteinID:BAD08134.1	ProteinID:BAF07624.1
ProteinID:BAS76702.1	ProteinID:EEE56199.1	GO:GO:0000003	GO:GO:0000978	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009555	GO:GO:0009653	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	GO:GO:0046983	GO:GO:0048653	GO:GO:0048654
GO:GO:0048657	GO:GO:0048658	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os02g0120500
EnsemblPlants:Os02t0120500-01	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR31945	PANTHER:PTHR31945:SF11	UniProt:Q6YUS3
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0000236741	RefSeq:XP_015625730.1	InterPro:bHLH_dom	SEG:seg

Description

TAPETUM DEGENERATION RETARDATIONBasic helix-loop-helix (bHLH) transcription factor, Tapetum development and degeneration (Os02t0120500-01);Similar to Helix-loop-helix DNA-binding domain containing protein. (Os02t0120500-02)

Coordinates

chr2:-:1073625..1076776

Molecular Weight (calculated)

58277.7 Da

IEP (calculated)

4.450

GRAVY (calculated)

-0.444

Length

552 amino acids

Sequence
(BLAST)

001: MGRGDHLLMK NSNAAAAAAA VNGGGTSLDA ALRPLVGSDG WDYCIYWRLS PDQRFLEMTG FCCSSELEAQ VSALLDLPSS IPLDSSSIGM HAQALLSNQP
101: IWQSSSEEEE ADGGGGAKTR LLVPVAGGLV ELFASRYMAE EQQMAELVMA QCGGGGAGDD GGGQAWPPPE TPSFQWDGGA DAQRLMYGGS SLNLFDAAAA
201: DDDPFLGGGG GDAVGDEAAA AGAWPYAGMA VSEPSVAVAQ EQMQHAAGGG VAESGSEGRK LHGGDPEDDG DGEGRSGGAK RQQCKNLEAE RKRRKKLNGH
301: LYKLRSLVPN ITKMDRASIL GDAIDYIVGL QKQVKELQDE LEDNHVHHKP PDVLIDHPPP ASLVGLDNDD ASPPNSHQQQ PPLAVSGSSS RRSNKDPAMT
401: DDKVGGGGGG GHRMEPQLEV RQVQGNELFV QVLWEHKPGG FVRLMDAMNA LGLEVINVNV TTYKTLVLNV FRVMVRDSEV AVQADRVRDS LLEVTRETYP
501: GVWPSPQEED DAKFDGGDGG QAAAAAAAAG GEHYHDEVGG GYHQHLHYLA FD

Best Arabidopsis Sequence Match ( AT2G16910.1 )
(BLAST)

001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q

Arabidopsis Description

AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.