Factsheet for VIT_01s0127g00860.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g02540.t01	Wine grape	nucleus	86.27	81.36
KRH36073	Soybean	nucleus	48.2	51.66
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	23.86	49.83
Solyc08g062780.1.1	Tomato	nucleus	48.04	49.33
Bra002004.1-P	Field mustard	nucleus	45.59	49.21
CDY31399	Canola	nucleus	45.59	49.21
CDX71316	Canola	nucleus	45.59	49.12
CDX89760	Canola	nucleus	45.26	48.77
AT2G16910.1	Thale cress	nucleus	45.42	48.69
PGSC0003DMT400021165	Potato	nucleus	34.48	48.51
Bra013041.1-P	Field mustard	nucleus	44.61	48.06
CDY02227	Canola	nucleus	44.61	48.06
KRG90676	Soybean	extracellular, vacuole	44.61	47.31
GSMUA_Achr3P00640_001	Banana	nucleus	20.75	42.62
GSMUA_Achr1P07330_001	Banana	nucleus	26.63	38.63
VIT_01s0127g00650.t01	Wine grape	nucleus	9.97	34.66
TraesCS6A01G071300.1	Wheat	nucleus	31.05	34.55
Os02t0120500-01	Rice	nucleus	31.05	34.42
TraesCS6B01G095700.1	Wheat	nucleus	31.05	34.36
TraesCS6D01G069400.1	Wheat	nucleus	31.05	34.3
HORVU6Hr1G012760.1	Barley	nucleus	31.21	34.23
HORVU6Hr1G012730.1	Barley	nucleus	31.21	34.23
TraesCS6B01G095600.1	Wheat	nucleus	30.72	34.0
TraesCS6D01G069300.1	Wheat	nucleus	30.72	33.75
TraesCS6A01G071200.1	Wheat	nucleus	30.39	33.57
KXG29315	Sorghum	nucleus	31.05	33.27
Zm00001d053895_P001	Maize	nucleus	29.9	29.28
VIT_11s0052g00100.t01	Wine grape	nucleus	11.44	28.69
VIT_18s0001g08040.t01	Wine grape	nucleus	12.75	23.35
VIT_00s1312g00010.t01	Wine grape	nucleus	12.58	23.26
VIT_17s0000g03550.t01	Wine grape	nucleus	11.27	21.43
VIT_06s0061g00720.t01	Wine grape	nucleus	9.97	19.43
VIT_14s0068g01200.t01	Wine grape	nucleus	16.99	19.33
VIT_01s0244g00130.t01	Wine grape	nucleus	16.01	18.99
VIT_17s0000g00330.t01	Wine grape	nucleus	16.67	18.55
VIT_11s0037g01310.t01	Wine grape	cytosol	3.1	16.24
VIT_00s2739g00010.t01	Wine grape	cytosol	1.96	14.29

Protein Annotations

EntrezGene:100251619	wikigene:100251619	MapMan:15.5.32	Gene3D:4.10.280.10	InterPro:ACT_dom	ProteinID:CCB51774
ProteinID:CCB51774.1	ncoils:Coil	UniProt:F6HHT7	EMBL:FN595761	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR002912	InterPro:IPR011598	InterPro:IPR036638
EntrezGene:LOC100251619	wikigene:LOC100251619	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PFscan:PS51671	PANTHER:PTHR31945	PANTHER:PTHR31945:SF11	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00019829D5
ArrayExpress:VIT_01s0127g00860	EnsemblPlantsGene:VIT_01s0127g00860	EnsemblPlants:VIT_01s0127g00860.t01	RefSeq:XP_002263966	RefSeq:XP_002263966.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:8215666..8218166

Molecular Weight (calculated)

68513.3 Da

IEP (calculated)

4.822

GRAVY (calculated)

-0.567

Length

612 amino acids

Sequence
(BLAST)

001: MVNMVQSLKE RLRPLVGLKS WDYCVLWKLS EDQRFLDWMD CCCAGSENST QNGEEEILFP VSSVLPCRDA MLQHPRTKSC DLLAQLPSSI SLDSGIHGQT
101: LISNQPRWLN FCNSSDSSVL EETVGTRLLI PVLGGLIELF VANQVAEDQH VVNFVTTQCN IILMEQEAMM NSSNIDTIFS VNANAGNADE EKDPNNHFQA
201: TISPVTALEN LNDLPFDISV ERIRLCSSPM NFLQQFSYTS ESSVKNDIFF EGSDGSFLSE KVINPFMSSD CGFQEMEAMQ KSMMVCTNNS KNMHREMMEP
301: LANKEQLGDD KDSSTKQMAN QADSVSDCSD QIDDDDDLKY RRRTGKGTQS KNLVAERRRR KKLNDRLYAL RALVPKISKL DRASILGDAI EFVKELQKQA
401: KDLQDELEEH SDDEGGKINA GINSNHNNVQ SEILNNDGSG VNIGSKTENE EAQNGIHMGE AGNGSACRLP KQNHETDQIN NDKAQQMEPQ VEVAQIEGNE
501: FFVKVFCEHK AGGFARLMEA LSSLGLEVTN ANVTSCKGLV SNVFKVEKRD SEMVQADHVR DSLLELTKSP SEKWSDQMAY PLENGGGLDF HHHHYHLHSH
601: LLSSHHLHHH QN

Best Arabidopsis Sequence Match ( AT2G16910.1 )
(BLAST)

001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q

Arabidopsis Description

AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.