Factsheet for VIT_00s1312g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2739g00010.t01	Wine grape	cytosol	25.08	98.81
KRH73107	Soybean	mitochondrion, nucleus	38.37	77.91
GSMUA_Achr1P26300_001	Banana	nucleus	51.66	71.55
GSMUA_Achr7P03930_001	Banana	nucleus	50.76	70.89
KRH74438	Soybean	nucleus	68.88	68.26
VIT_18s0001g08040.t01	Wine grape	nucleus	68.88	68.26
GSMUA_AchrUn_...	Banana	nucleus	48.64	67.93
VIT_17s0000g03550.t01	Wine grape	nucleus	65.56	67.39
KRH39520	Soybean	nucleus	67.37	66.97
GSMUA_Achr8P34120_001	Banana	nucleus	54.68	63.29
KRH45479	Soybean	nucleus	58.01	60.0
PGSC0003DMT400016360	Potato	nucleus	55.89	54.73
Solyc02g063430.2.1	Tomato	nucleus	52.27	53.89
TraesCS4D01G328700.1	Wheat	cytosol	23.26	52.74
AT5G65640.1	Thale cress	nucleus	54.38	51.28
Solyc02g091690.2.1	Tomato	nucleus	50.45	50.76
CDY37835	Canola	nucleus	54.38	50.28
Bra031852.1-P	Field mustard	nucleus	54.38	50.28
CDY08769	Canola	nucleus	54.38	50.14
Bra024404.1-P	Field mustard	nucleus	54.38	50.14
CDY69978	Canola	nucleus	54.08	50.0
AT5G10570.1	Thale cress	nucleus	47.13	49.52
Solyc12g088130.1.1	Tomato	nucleus	49.85	49.11
CDX97027	Canola	nucleus	43.81	48.66
Bra009022.1-P	Field mustard	nucleus	44.11	48.18
CDX69821	Canola	nucleus	43.2	47.19
TraesCS4B01G331900.1	Wheat	nucleus	40.18	43.61
Os03t0135700-01	Rice	nucleus	45.62	42.66
Zm00001d027546_P001	Maize	nucleus	44.41	39.95
EER92904	Sorghum	nucleus	44.71	39.68
VIT_11s0037g01310.t01	Wine grape	cytosol	13.9	39.32
TraesCS4D01G329100.1	Wheat	nucleus	41.39	39.14
TraesCS5A01G503300.1	Wheat	nucleus	41.39	38.81
TraesCS4D01G328900.1	Wheat	nucleus	40.79	38.79
TraesCS4B01G332000.1	Wheat	nucleus	40.48	38.62
TraesCSU01G069400.1	Wheat	nucleus	40.48	38.07
TraesCS4D01G329000.2	Wheat	nucleus	40.48	37.96
TraesCS3D01G058100.1	Wheat	nucleus	33.84	37.84
TraesCS5A01G503500.1	Wheat	nucleus	40.18	37.78
TraesCS4D01G328800.1	Wheat	nucleus	40.18	37.68
TraesCS3A01G057900.1	Wheat	nucleus	37.16	37.61
HORVU4Hr1G080890.1	Barley	nucleus	40.18	37.46
TraesCS5A01G503400.1	Wheat	nucleus	38.67	35.46
TraesCS3B01G070400.1	Wheat	nucleus	32.33	35.08
TraesCS3A01G058000.1	Wheat	nucleus	31.42	34.67
TraesCSU01G069300.1	Wheat	nucleus	35.95	33.81
VIT_11s0052g00100.t01	Wine grape	nucleus	16.62	22.54
VIT_14s0068g01200.t01	Wine grape	nucleus	31.72	19.52
VIT_17s0000g00330.t01	Wine grape	nucleus	32.33	19.45
VIT_01s0244g00130.t01	Wine grape	nucleus	29.91	19.19
VIT_06s0061g00720.t01	Wine grape	nucleus	16.31	17.2
VIT_01s0127g00650.t01	Wine grape	nucleus	8.76	16.48
VIT_01s0127g00860.t01	Wine grape	nucleus	23.26	12.58
VIT_03s0038g02540.t01	Wine grape	nucleus	23.26	11.86

Protein Annotations

EntrezGene:100267616	wikigene:100267616	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:AHM24956.1	ProteinID:CCB62946
ProteinID:CCB62946.1	ncoils:Coil	UniProt:F6I7M7	EMBL:FN596840	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100267616
wikigene:LOC100267616	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR31945	PANTHER:PTHR31945:SF6	SMART:SM00353
SUPFAM:SSF47459	TIGR:TC52497	UniParc:UPI00015CE4E8	ArrayExpress:VIT_00s1312g00010	EnsemblPlantsGene:VIT_00s1312g00010	EnsemblPlants:VIT_00s1312g00010.t01
unigene:Vvi.5703	RefSeq:XP_002264407	RefSeq:XP_002264407.1	InterPro:bHLH_dom	SEG:seg	:

Description

Inducer of CBF expression 4 [Source:UniProtKB/TrEMBL;Acc:F6I7M7]

Coordinates

chrUn:+:38475226..38476848

Molecular Weight (calculated)

37455.4 Da

IEP (calculated)

4.398

GRAVY (calculated)

-0.469

Length

331 amino acids

Sequence
(BLAST)

001: MEPSQHGLLE EFLALRRDTC STFTSAVNEF FPNGWNFDAF DENQVLSTSN PSFEGFSTPT EPIFECPFSE VYPSVDGFTV AEIDSSYHKN DGTPPFPIQE
101: EYPSLVEDED IGLLNSDLHG LEERNTSCKV EMEQAMDAPV FNLGLCGERK ARVKKLEGQP SKNLMAERRR RKRLNDRLSM LRSIVPKISK MDRTSILGDT
201: IDYMKELLEK INKLQEEEIE VGSDQTNLMG IFKELKPNEV LVRNSPKFDV ERRNMDTRIE ICCAAKPGLL LSTVNTLELL GLEIQQCVIS CFNDFSMQAS
301: CSDVLEQQAE TNSEDIKQAL FRNAGYGGRC L

Best Arabidopsis Sequence Match ( AT5G65640.1 )
(BLAST)

001: MELSTQMNVF EELLVPTKQE TTDNNINNLS FNGGFDHHHH QFFPNGYNID YLCFNNEEED ENTLLYPSSF MDLISQPPPL LLHQPPPLQP LSPPLSSSAT
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L

Arabidopsis Description

BHLH93Transcription factor bHLH93 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSL1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.