Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024404.1-P | Field mustard | nucleus | 89.74 | 87.74 |
| CDY08769 | Canola | nucleus | 89.46 | 87.47 |
| CDY69978 | Canola | nucleus | 88.32 | 86.59 |
| Bra031852.1-P | Field mustard | nucleus | 87.18 | 85.47 |
| CDY37835 | Canola | nucleus | 86.89 | 85.2 |
| KRH73107 | Soybean | mitochondrion, nucleus | 33.33 | 71.78 |
| AT5G10570.1 | Thale cress | nucleus | 63.53 | 70.79 |
| KRG99605 | Soybean | cytosol | 27.64 | 61.39 |
| GSMUA_Achr1P26300_001 | Banana | nucleus | 41.03 | 60.25 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.46 | 59.92 |
| GSMUA_Achr7P03930_001 | Banana | nucleus | 39.89 | 59.07 |
| VIT_00s1312g00010.t01 | Wine grape | nucleus | 51.28 | 54.38 |
| GSMUA_Achr8P34120_001 | Banana | nucleus | 43.02 | 52.8 |
| KRH74438 | Soybean | nucleus | 50.14 | 52.69 |
| KRH39520 | Soybean | nucleus | 49.57 | 52.25 |
| KRH62159 | Soybean | nucleus | 48.43 | 51.52 |
| KRH45479 | Soybean | nucleus | 46.72 | 51.25 |
| VIT_18s0001g08040.t01 | Wine grape | nucleus | 48.43 | 50.9 |
| KRH52870 | Soybean | nucleus | 47.58 | 50.45 |
| KRH16156 | Soybean | nucleus | 38.75 | 50.0 |
| Solyc02g063430.2.1 | Tomato | nucleus | 45.58 | 49.84 |
| PGSC0003DMT400026937 | Potato | nucleus | 46.15 | 49.69 |
| VIT_17s0000g03550.t01 | Wine grape | nucleus | 45.3 | 49.38 |
| KRH16909 | Soybean | nucleus | 46.72 | 48.81 |
| TraesCS4D01G328700.1 | Wheat | cytosol | 19.94 | 47.95 |
| KRH72519 | Soybean | nucleus | 45.3 | 47.75 |
| PGSC0003DMT400078675 | Potato | nucleus | 44.44 | 46.57 |
| Solyc02g091690.2.1 | Tomato | nucleus | 43.02 | 45.9 |
| TraesCS4B01G331900.1 | Wheat | nucleus | 34.19 | 39.34 |
| Os03t0135700-01 | Rice | nucleus | 39.03 | 38.7 |
| TraesCS3A01G057900.1 | Wheat | nucleus | 34.47 | 37.0 |
| Zm00001d027546_P001 | Maize | nucleus | 38.46 | 36.68 |
| TraesCS3D01G058100.1 | Wheat | nucleus | 30.77 | 36.49 |
| EER92904 | Sorghum | nucleus | 38.75 | 36.46 |
| TraesCS4D01G329100.1 | Wheat | nucleus | 35.33 | 35.43 |
| TraesCS5A01G503300.1 | Wheat | nucleus | 35.61 | 35.41 |
| TraesCS4D01G328900.1 | Wheat | nucleus | 35.04 | 35.34 |
| TraesCS3A01G058000.1 | Wheat | nucleus | 30.2 | 35.33 |
| HORVU4Hr1G080890.1 | Barley | nucleus | 35.61 | 35.21 |
| TraesCS4B01G332000.1 | Wheat | nucleus | 34.76 | 35.16 |
| TraesCSU01G069400.1 | Wheat | nucleus | 35.04 | 34.94 |
| TraesCS4D01G329000.2 | Wheat | nucleus | 35.04 | 34.84 |
| TraesCS3B01G070400.1 | Wheat | nucleus | 30.2 | 34.75 |
| TraesCS5A01G503500.1 | Wheat | nucleus | 34.76 | 34.66 |
| TraesCS4D01G328800.1 | Wheat | nucleus | 34.47 | 34.28 |
| TraesCS5A01G503400.1 | Wheat | nucleus | 33.62 | 32.69 |
| TraesCSU01G069300.1 | Wheat | nucleus | 31.05 | 30.97 |
| AT4G29930.3 | Thale cress | nucleus | 18.23 | 24.33 |
| AT1G12860.1 | Thale cress | nucleus | 27.92 | 21.78 |
| AT5G57150.4 | Thale cress | nucleus | 15.95 | 21.21 |
| AT3G26744.1 | Thale cress | nucleus | 29.63 | 21.05 |
| AT2G28160.1 | Thale cress | nucleus | 16.81 | 18.55 |
| AT2G16910.1 | Thale cress | nucleus | 24.22 | 14.89 |
| AT1G10610.1 | Thale cress | nucleus | 17.38 | 13.83 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:836690 | ProteinID:AED98080.1 | ProteinID:AED98081.1 | EMBL:AF488621 |
| EMBL:AK229018 | ArrayExpress:AT5G65640 | EnsemblPlantsGene:AT5G65640 | RefSeq:AT5G65640 | TAIR:AT5G65640 | RefSeq:AT5G65640-TAIR-G |
| EnsemblPlants:AT5G65640.1 | TAIR:AT5G65640.1 | EMBL:AY085134 | ProteinID:BAA98183.1 | EMBL:BT025665 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006629 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010371 | GO:GO:0019748 | GO:GO:0045487 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_001078801.1 | RefSeq:NP_569014.1 | PFAM:PF00010 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF6 | UniProt:Q9LSL1 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI00000A84B1 | Symbol:bHLH093 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
BHLH93Transcription factor bHLH93 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSL1]
Coordinates
chr5:+:26236964..26239219
Molecular Weight (calculated)
39486.3 Da
IEP (calculated)
4.542
GRAVY (calculated)
-0.622
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MELSTQMNVF EELLVPTKQE TTDNNINNLS FNGGFDHHHH QFFPNGYNID YLCFNNEEED ENTLLYPSSF MDLISQPPPL LLHQPPPLQP LSPPLSSSAT
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.