Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98033 | Canola | nucleus | 37.78 | 91.89 |
| CDY19416 | Canola | nucleus | 37.56 | 91.35 |
| CDY21073 | Canola | nucleus | 74.44 | 77.73 |
| CDY34601 | Canola | nucleus | 76.67 | 77.7 |
| Bra019794.1-P | Field mustard | nucleus | 73.11 | 77.41 |
| Bra016749.1-P | Field mustard | nucleus | 74.44 | 77.37 |
| GSMUA_Achr6P08070_001 | Banana | nucleus | 36.89 | 76.15 |
| AT3G26744.1 | Thale cress | nucleus | 69.33 | 63.16 |
| VIT_14s0068g01200.t01 | Wine grape | nucleus | 60.44 | 50.56 |
| KRG94685 | Soybean | nucleus | 46.89 | 49.53 |
| EES04142 | Sorghum | nucleus | 39.11 | 46.81 |
| TraesCS3B01G476000.1 | Wheat | nucleus | 39.11 | 46.44 |
| TraesCS3D01G434900.1 | Wheat | nucleus | 39.11 | 46.19 |
| HORVU3Hr1G096460.5 | Barley | nucleus | 38.89 | 46.17 |
| TraesCS3A01G442200.1 | Wheat | nucleus | 38.89 | 45.69 |
| GSMUA_Achr10P... | Banana | nucleus | 51.56 | 45.58 |
| KRH06841 | Soybean | nucleus | 45.56 | 45.56 |
| Os01t0928000-01 | Rice | nucleus | 38.0 | 44.88 |
| KRH08406 | Soybean | nucleus | 43.78 | 44.37 |
| Zm00001d042263_P001 | Maize | nucleus | 38.89 | 41.87 |
| Solyc03g118310.2.1 | Tomato | nucleus | 48.22 | 41.1 |
| PGSC0003DMT400036951 | Potato | nucleus | 47.78 | 39.02 |
| AT5G10570.1 | Thale cress | nucleus | 19.78 | 28.25 |
| AT5G65640.1 | Thale cress | nucleus | 21.78 | 27.92 |
| AT5G57150.4 | Thale cress | nucleus | 11.56 | 19.7 |
| AT4G29930.3 | Thale cress | nucleus | 11.11 | 19.01 |
| AT2G28160.1 | Thale cress | nucleus | 12.22 | 17.3 |
| AT2G16910.1 | Thale cress | nucleus | 18.67 | 14.71 |
| AT1G10610.1 | Thale cress | nucleus | 12.22 | 12.47 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.4.3.4.1 | Gene3D:4.10.280.10 | EntrezGene:837843 | ProteinID:AAF78492.1 | InterPro:ACT_dom |
| ProteinID:AEE28940.1 | EMBL:AF488572 | EMBL:AK118011 | ArrayExpress:AT1G12860 | EnsemblPlantsGene:AT1G12860 | RefSeq:AT1G12860 |
| TAIR:AT1G12860 | RefSeq:AT1G12860-TAIR-G | EnsemblPlants:AT1G12860.1 | TAIR:AT1G12860.1 | Unigene:At.42057 | EMBL:BT005377 |
| EMBL:EU369670 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010444 | GO:GO:0030154 |
| GO:GO:0046983 | GO:GO:0050826 | InterPro:HLH_DNA-bd_sf | InterPro:IPR002912 | InterPro:IPR011598 | InterPro:IPR036638 |
| RefSeq:NP_172746.2 | PFAM:PF00010 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PFscan:PS50888 | PFscan:PS51671 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF13 | UniProt:Q9LPW3 | Symbol:SCRM2 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000000C621 | InterPro:bHLH_dom | SEG:seg | : |
Description
SCRM2Transcription factor SCREAM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW3]
Coordinates
chr1:+:4384304..4386651
Molecular Weight (calculated)
49798.5 Da
IEP (calculated)
6.190
GRAVY (calculated)
-0.603
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSDGVWLDG SGESPEVNNG EAASWVRNPD EDWFNNPPPP QHTNQNDFRF NGGFPLNPSE NLLLLLQQSI DSSSSSSPLL HPFTLDAASQ QQQQQQQQQE
101: QSFLATKACI VSLLNVPTIN NNTFDDFGFD SGFLGQQFHG NHQSPNSMNF TGLNHSVPDF LPAPENSSGS CGLSPLFSNR AKVLKPLQVM ASSGSQPTLF
201: QKRAAMRQSS SSKMCNSESS SEMRKSSYER EIDDTSTGII DISGLNYESD DHNTNNNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS
301: ILGDAIDYLK ELLQRINDLH TELESTPPSS SSLHPLTPTP QTLSYRVKEE LCPSSSLPSP KGQQPRVEVR LREGKAVNIH MFCGRRPGLL LSTMRALDNL
401: GLDVQQAVIS CFNGFALDVF RAEQCQEDHD VLPEQIKAVL LDTAGYAGLV
101: QSFLATKACI VSLLNVPTIN NNTFDDFGFD SGFLGQQFHG NHQSPNSMNF TGLNHSVPDF LPAPENSSGS CGLSPLFSNR AKVLKPLQVM ASSGSQPTLF
201: QKRAAMRQSS SSKMCNSESS SEMRKSSYER EIDDTSTGII DISGLNYESD DHNTNNNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS
301: ILGDAIDYLK ELLQRINDLH TELESTPPSS SSLHPLTPTP QTLSYRVKEE LCPSSSLPSP KGQQPRVEVR LREGKAVNIH MFCGRRPGLL LSTMRALDNL
401: GLDVQQAVIS CFNGFALDVF RAEQCQEDHD VLPEQIKAVL LDTAGYAGLV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.