CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98033	Canola	nucleus	31.53	75.68
CDY19416	Canola	nucleus	31.31	75.14
GSMUA_Achr6P08070_001	Banana	nucleus	35.59	72.48
KRH41065	Soybean	nucleus	19.37	61.87
KRG94685	Soybean	nucleus	47.97	50.0
Bra032947.1-P	Field mustard	nucleus	47.97	48.19
CDY28529	Canola	nucleus	47.07	47.61
Bra034246.1-P	Field mustard	nucleus	44.59	47.37
KRH63854	Soybean	nucleus	49.1	46.88
KRH54112	Soybean	nucleus	48.65	46.75
KRH06841	Soybean	nucleus	47.3	46.67
KRH73107	Soybean	mitochondrion, nucleus	16.89	46.01
VIT_14s0068g01200.t01	Wine grape	nucleus	55.41	45.72
AT3G26744.1	Thale cress	nucleus	50.0	44.94
CDY48974	Canola	nucleus	47.97	44.47
Bra025226.1-P	Field mustard	nucleus	49.77	44.47
TraesCS3B01G476000.1	Wheat	nucleus	37.84	44.33
TraesCS3D01G434900.1	Wheat	nucleus	37.84	44.09
HORVU3Hr1G096460.5	Barley	nucleus	37.61	44.06
AT1G12860.1	Thale cress	nucleus	44.37	43.78
TraesCS3A01G442200.1	Wheat	nucleus	37.61	43.6
Os01t0928000-01	Rice	nucleus	37.39	43.57
EES04142	Sorghum	nucleus	35.59	42.02
CDY21073	Canola	nucleus	40.77	42.0
Bra019794.1-P	Field mustard	nucleus	40.09	41.88
Bra016749.1-P	Field mustard	nucleus	40.77	41.8
CDY34601	Canola	nucleus	40.99	40.99
KRH59747	Soybean	nucleus	43.24	39.75
GSMUA_Achr10P...	Banana	nucleus	44.59	38.9
Zm00001d042263_P001	Maize	nucleus	35.81	38.04
Solyc03g118310.2.1	Tomato	nucleus	44.14	37.12
PGSC0003DMT400036951	Potato	nucleus	44.59	35.93
KRG99605	Soybean	cytosol	11.26	31.65
KRH45479	Soybean	nucleus	21.62	30.0
KRH39520	Soybean	nucleus	21.62	28.83
KRH74438	Soybean	nucleus	21.62	28.74
KRH52870	Soybean	nucleus	20.05	26.89
KRH12334	Soybean	nucleus	14.64	26.75
KRH62159	Soybean	nucleus	19.82	26.67
KRH37338	Soybean	nucleus	14.64	26.64
KRH16156	Soybean	nucleus	16.22	26.47
KRH16909	Soybean	nucleus	19.59	25.89
KRH72519	Soybean	nucleus	18.92	25.23
KRH19109	Soybean	nucleus	12.84	24.68
KRH26533	Soybean	nucleus	15.54	21.43
KRH22827	Soybean	nucleus	15.32	21.05
KRH30560	Soybean	nucleus	13.51	19.23
KRH25108	Soybean	nucleus	12.16	18.95
KRH02772	Soybean	nucleus	14.19	18.53
KRH36073	Soybean	nucleus	20.95	16.29
KRG90676	Soybean	extracellular, vacuole	20.72	15.94
KRH45665	Soybean	nucleus	16.89	15.12

Protein Annotations

MapMan:15.5.32	MapMan:26.4.3.4.1	Gene3D:4.10.280.10	UniProt:A0A0R0FQW7	EMBL:ACUP02010169	ncoils:Coil
EnsemblPlantsGene:GLYMA_16G147200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRH08406	ProteinID:KRH08406	ProteinID:KRH08406.1	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR31945	PANTHER:PTHR31945:SF13	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0006ED826B
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:30790434..30794730

Molecular Weight (calculated)

48717.6 Da

IEP (calculated)

4.930

GRAVY (calculated)

-0.648

Length

444 amino acids

Sequence
(BLAST)

001: MLPTRALTHT LGVPWTEPEN DAVTGDAALL ASFKSMLDRD WYMDQPHCDF LQNDAAFLEH PLGSSSSSSS SSLPQQQHFV VPPKPCYFNV NGNGPLECGF
101: ELGSQSSFLA PFPVNALELS LDPEFPASKP GGGLIRREEK QRPLDALAPS TLYQKRTERW REAGKAEELA MPPPPPPQLA MEKRRKRGEE GEDEGGLNYE
201: SGEDMKLEEN GVDANNNDND NDDDDDDGDG DNGNGNGGGG GGDQKGKKKK RKKMPAKNLM AERRRRKKLN DKLYMLRSVV PNISKMDRAS ILGDAIDYLR
301: ELQVRITDLN HELESGPPGS SLPPAASFHP VTPTLPTLPC RVKEEICPIS LPSPKNQSAK VEVTVREGGA VNIHMFCAHR PGLLLSTMRA MDSLGLDVQQ
401: AVISCFNGFS LDVFRAEQCR EGQDVLPEQI KEVLLDTAGF HGMM

Best Arabidopsis Sequence Match ( AT1G12860.1 )
(BLAST)

001: MNSDGVWLDG SGESPEVNNG EAASWVRNPD EDWFNNPPPP QHTNQNDFRF NGGFPLNPSE NLLLLLQQSI DSSSSSSPLL HPFTLDAASQ QQQQQQQQQE
101: QSFLATKACI VSLLNVPTIN NNTFDDFGFD SGFLGQQFHG NHQSPNSMNF TGLNHSVPDF LPAPENSSGS CGLSPLFSNR AKVLKPLQVM ASSGSQPTLF
201: QKRAAMRQSS SSKMCNSESS SEMRKSSYER EIDDTSTGII DISGLNYESD DHNTNNNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS
301: ILGDAIDYLK ELLQRINDLH TELESTPPSS SSLHPLTPTP QTLSYRVKEE LCPSSSLPSP KGQQPRVEVR LREGKAVNIH MFCGRRPGLL LSTMRALDNL
401: GLDVQQAVIS CFNGFALDVF RAEQCQEDHD VLPEQIKAVL LDTAGYAGLV

Arabidopsis Description

SCRM2Transcription factor SCREAM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.