Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH41065 | Soybean | nucleus | 23.6 | 82.01 |
| KRH63854 | Soybean | nucleus | 57.14 | 59.35 |
| KRH54112 | Soybean | nucleus | 55.9 | 58.44 |
| KRG94685 | Soybean | nucleus | 41.82 | 47.42 |
| KRH73107 | Soybean | mitochondrion, nucleus | 15.32 | 45.4 |
| KRH08406 | Soybean | nucleus | 39.75 | 43.24 |
| KRH06841 | Soybean | nucleus | 40.17 | 43.11 |
| KRG99605 | Soybean | cytosol | 10.14 | 31.01 |
| KRH45479 | Soybean | nucleus | 20.08 | 30.31 |
| KRH39520 | Soybean | nucleus | 20.29 | 29.43 |
| KRH74438 | Soybean | nucleus | 20.08 | 29.04 |
| KRH62159 | Soybean | nucleus | 19.46 | 28.48 |
| KRH52870 | Soybean | nucleus | 19.25 | 28.1 |
| KRH16909 | Soybean | nucleus | 18.63 | 26.79 |
| KRH37338 | Soybean | nucleus | 13.46 | 26.64 |
| KRH72519 | Soybean | nucleus | 18.22 | 26.43 |
| KRH16156 | Soybean | nucleus | 14.49 | 25.74 |
| KRH12334 | Soybean | nucleus | 12.63 | 25.1 |
| KRH19109 | Soybean | nucleus | 11.18 | 23.38 |
| KRH26533 | Soybean | nucleus | 14.91 | 22.36 |
| KRH22827 | Soybean | nucleus | 14.7 | 21.98 |
| KRH25108 | Soybean | nucleus | 12.63 | 21.4 |
| KRH30560 | Soybean | nucleus | 13.66 | 21.15 |
| KRH02772 | Soybean | nucleus | 12.63 | 17.94 |
| KRH36073 | Soybean | nucleus | 19.05 | 16.11 |
| KRG90676 | Soybean | extracellular, vacuole | 18.84 | 15.77 |
| KRH45665 | Soybean | nucleus | 15.73 | 15.32 |
Protein Annotations
| EntrezGene:100217334 | MapMan:15.5.32 | MapMan:26.4.3.4.1 | Gene3D:4.10.280.10 | EMBL:ACUP02003341 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_05G200900 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | UniProt:K7KS78 | EnsemblPlants:KRH59747 | ProteinID:KRH59747 | ProteinID:KRH59747.1 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF2 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI00023C4B03 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr5:-:38468807..38473273
Molecular Weight (calculated)
52630.1 Da
IEP (calculated)
6.700
GRAVY (calculated)
-0.493
Length
483 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSGWMQDTA EEQNSASASW PNSNANNELS CVSLCAYKPI SSQIHEAEWR HVPNNITHTN VAASDNYNLL QQPLHPTNLN FLTPKPTFYP LEMSSDVGFL
101: DPQASFTSKT DGDVFLSSNN NLLTLPNMSS SMCVVSPQPQ QQGSVVGFSG FKNIMGSDHD HVVEGSRKAL LLSCRSSILR PLESLPPSGS QPTLFQKRAA
201: LRKNLAVADD NCKGKKSEVL IDSKKRGTCN NVGEGVEGGS FDGSGLNNYD SDEISDDNNK MEEISARNGG NSSKANSTVT GSGVDQKGKK KTGIPAKNLM
301: AERRRRKKLN DRLYMLRSVV PNISKMDRAS ILGDAIEYLK ELLQRISELH NELESTPAGG SSSFLHHPLT PTTLPARMQE ELCLSSLPSP NGHPANARVE
401: VGLREGRGVN IHMFCDRKPG LLLSTMTALD NLGLDIQQAV ISYVNGFAMD IFRAEQRNEG QDVHPEQIKA VLLDSAAGFH SMS
101: DPQASFTSKT DGDVFLSSNN NLLTLPNMSS SMCVVSPQPQ QQGSVVGFSG FKNIMGSDHD HVVEGSRKAL LLSCRSSILR PLESLPPSGS QPTLFQKRAA
201: LRKNLAVADD NCKGKKSEVL IDSKKRGTCN NVGEGVEGGS FDGSGLNNYD SDEISDDNNK MEEISARNGG NSSKANSTVT GSGVDQKGKK KTGIPAKNLM
301: AERRRRKKLN DRLYMLRSVV PNISKMDRAS ILGDAIEYLK ELLQRISELH NELESTPAGG SSSFLHHPLT PTTLPARMQE ELCLSSLPSP NGHPANARVE
401: VGLREGRGVN IHMFCDRKPG LLLSTMTALD NLGLDIQQAV ISYVNGFAMD IFRAEQRNEG QDVHPEQIKA VLLDSAAGFH SMS
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
Arabidopsis Description
SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.