Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G476000.1 | Wheat | nucleus | 98.95 | 99.47 |
| TraesCS3A01G442200.1 | Wheat | nucleus | 99.21 | 98.69 |
| HORVU3Hr1G096460.5 | Barley | nucleus | 95.8 | 96.31 |
| CDX98033 | Canola | nucleus | 36.22 | 74.59 |
| CDY19416 | Canola | nucleus | 35.96 | 74.05 |
| GSMUA_Achr6P08070_001 | Banana | nucleus | 42.26 | 73.85 |
| Os01t0928000-01 | Rice | nucleus | 72.44 | 72.44 |
| EES04142 | Sorghum | nucleus | 70.34 | 71.28 |
| Zm00001d042263_P001 | Maize | nucleus | 70.6 | 64.35 |
| Bra034246.1-P | Field mustard | nucleus | 45.67 | 41.63 |
| KRG94685 | Soybean | nucleus | 46.19 | 41.31 |
| CDY28529 | Canola | nucleus | 45.93 | 39.86 |
| Bra032947.1-P | Field mustard | nucleus | 46.19 | 39.82 |
| AT1G12860.1 | Thale cress | nucleus | 46.19 | 39.11 |
| Bra019794.1-P | Field mustard | nucleus | 43.31 | 38.82 |
| KRH06841 | Soybean | nucleus | 45.67 | 38.67 |
| Bra016749.1-P | Field mustard | nucleus | 43.83 | 38.57 |
| CDY21073 | Canola | nucleus | 43.57 | 38.52 |
| KRH08406 | Soybean | nucleus | 44.09 | 37.84 |
| CDY34601 | Canola | nucleus | 43.83 | 37.61 |
| CDY48974 | Canola | nucleus | 46.72 | 37.16 |
| Bra025226.1-P | Field mustard | nucleus | 48.29 | 37.02 |
| VIT_14s0068g01200.t01 | Wine grape | nucleus | 51.97 | 36.8 |
| AT3G26744.1 | Thale cress | nucleus | 47.51 | 36.64 |
| GSMUA_Achr10P... | Banana | nucleus | 48.03 | 35.95 |
| TraesCS7D01G308300.1 | Wheat | nucleus | 48.03 | 34.79 |
| Solyc03g118310.2.1 | Tomato | nucleus | 46.72 | 33.71 |
| PGSC0003DMT400036951 | Potato | nucleus | 45.93 | 31.76 |
| TraesCS4D01G328700.1 | Wheat | cytosol | 11.81 | 30.82 |
| TraesCS4D01G051600.2 | Wheat | nucleus | 40.42 | 30.8 |
| TraesCS7D01G529200.1 | Wheat | nucleus | 24.67 | 27.81 |
| TraesCS3D01G058100.1 | Wheat | nucleus | 19.16 | 24.66 |
| TraesCS4D01G329000.2 | Wheat | nucleus | 22.57 | 24.36 |
| TraesCS4D01G329100.1 | Wheat | nucleus | 22.31 | 24.29 |
| TraesCS4D01G328800.1 | Wheat | nucleus | 22.31 | 24.08 |
| TraesCS4D01G328900.1 | Wheat | nucleus | 21.78 | 23.85 |
| TraesCS2D01G270300.1 | Wheat | nucleus | 14.44 | 19.78 |
| TraesCS2D01G270000.2 | Wheat | nucleus | 13.91 | 19.78 |
| TraesCS6D01G069400.1 | Wheat | nucleus | 20.47 | 14.08 |
| TraesCS3D01G017700.1 | Wheat | nucleus | 13.39 | 13.71 |
| TraesCS6D01G069300.1 | Wheat | nucleus | 19.95 | 13.64 |
| TraesCS3D01G435200.1 | Wheat | nucleus | 11.29 | 13.61 |
| TraesCS2D01G280100.1 | Wheat | nucleus | 11.81 | 13.27 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G434900.1 | EnsemblPlantsGene:TraesCS3D01G434900 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR31945 |
| PANTHER:PTHR31945:SF2 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| SUPFAM:SSF55021 | TIGR:cd00083 | TIGR:cd04873 | MapMan:15.5.32 | MapMan:26.4.3.4.1 | : |
Description
No Description!
Coordinates
chr3D:-:547428594..547431398
Molecular Weight (calculated)
39552.0 Da
IEP (calculated)
4.802
GRAVY (calculated)
-0.162
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSAAAVGV EKEDELVGGG GGDWGYLTSE AMATAGFPAF GFPCGARGGV TPAPTSASLL MSMEHAALFD YNAAFPSSSS SAAAAPPAYH DFGSGGNPFN
101: VDAPPFLLEA PPPLTVAPGG QKGGFLAPPL SAFGDGMGWD DEDELDQQSV DASSLGVSAS LENAVVGAPG GGGGGGGGNG KGKKKGMPAK NLMAERRRRK
201: KLNDRLYMLR SVVPKISKMD RASILGDAID YLKELLQRIS DLHSELESAP SSAALGGPST ANSFLPSTPT LQPFPGRIKE ERCPPAPFPS PSGQQATVEV
301: RMREGQAVNI HMFCARRPGI LLSTMRALDS LGLDIEQAVI SCFDGFAMDV FRAEQCREGP GLLPEEIKAV LLHCAGLQNA M
101: VDAPPFLLEA PPPLTVAPGG QKGGFLAPPL SAFGDGMGWD DEDELDQQSV DASSLGVSAS LENAVVGAPG GGGGGGGGNG KGKKKGMPAK NLMAERRRRK
201: KLNDRLYMLR SVVPKISKMD RASILGDAID YLKELLQRIS DLHSELESAP SSAALGGPST ANSFLPSTPT LQPFPGRIKE ERCPPAPFPS PSGQQATVEV
301: RMREGQAVNI HMFCARRPGI LLSTMRALDS LGLDIEQAVI SCFDGFAMDV FRAEQCREGP GLLPEEIKAV LLHCAGLQNA M
001: MNSDGVWLDG SGESPEVNNG EAASWVRNPD EDWFNNPPPP QHTNQNDFRF NGGFPLNPSE NLLLLLQQSI DSSSSSSPLL HPFTLDAASQ QQQQQQQQQE
101: QSFLATKACI VSLLNVPTIN NNTFDDFGFD SGFLGQQFHG NHQSPNSMNF TGLNHSVPDF LPAPENSSGS CGLSPLFSNR AKVLKPLQVM ASSGSQPTLF
201: QKRAAMRQSS SSKMCNSESS SEMRKSSYER EIDDTSTGII DISGLNYESD DHNTNNNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS
301: ILGDAIDYLK ELLQRINDLH TELESTPPSS SSLHPLTPTP QTLSYRVKEE LCPSSSLPSP KGQQPRVEVR LREGKAVNIH MFCGRRPGLL LSTMRALDNL
401: GLDVQQAVIS CFNGFALDVF RAEQCQEDHD VLPEQIKAVL LDTAGYAGLV
101: QSFLATKACI VSLLNVPTIN NNTFDDFGFD SGFLGQQFHG NHQSPNSMNF TGLNHSVPDF LPAPENSSGS CGLSPLFSNR AKVLKPLQVM ASSGSQPTLF
201: QKRAAMRQSS SSKMCNSESS SEMRKSSYER EIDDTSTGII DISGLNYESD DHNTNNNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS
301: ILGDAIDYLK ELLQRINDLH TELESTPPSS SSLHPLTPTP QTLSYRVKEE LCPSSSLPSP KGQQPRVEVR LREGKAVNIH MFCGRRPGLL LSTMRALDNL
401: GLDVQQAVIS CFNGFALDVF RAEQCQEDHD VLPEQIKAVL LDTAGYAGLV
Arabidopsis Description
SCRM2Transcription factor SCREAM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.