Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G211600.1 | Wheat | nucleus | 98.48 | 98.48 |
| TraesCS7A01G311800.1 | Wheat | nucleus | 96.96 | 97.89 |
| HORVU7Hr1G074490.3 | Barley | nucleus | 93.73 | 92.32 |
| Zm00001d049294_P001 | Maize | nucleus | 71.1 | 72.2 |
| Os11t0523700-01 | Rice | nucleus | 71.86 | 72.14 |
| EES08566 | Sorghum | nucleus | 70.53 | 71.35 |
| TraesCS4D01G051600.2 | Wheat | nucleus | 58.17 | 61.2 |
| Zm00001d007382_P001 | Maize | nucleus | 56.65 | 57.42 |
| KRH54112 | Soybean | nucleus | 44.87 | 51.08 |
| KRH63854 | Soybean | nucleus | 44.11 | 49.89 |
| TraesCS3D01G434900.1 | Wheat | nucleus | 34.79 | 48.03 |
| PGSC0003DMT400074075 | Potato | nucleus | 46.39 | 46.04 |
| Solyc06g068870.2.1 | Tomato | nucleus | 46.01 | 45.57 |
| VIT_01s0244g00130.t01 | Wine grape | nucleus | 43.35 | 44.19 |
| TraesCS4D01G328700.1 | Wheat | cytosol | 7.41 | 26.71 |
| TraesCS7D01G529200.1 | Wheat | nucleus | 16.73 | 26.04 |
| TraesCS4D01G329100.1 | Wheat | nucleus | 17.11 | 25.71 |
| TraesCS4D01G329000.2 | Wheat | nucleus | 16.92 | 25.21 |
| TraesCS4D01G328900.1 | Wheat | nucleus | 16.54 | 25.0 |
| TraesCS4D01G328800.1 | Wheat | nucleus | 16.16 | 24.08 |
| TraesCS3D01G058100.1 | Wheat | nucleus | 13.31 | 23.65 |
| TraesCS2D01G270300.1 | Wheat | nucleus | 11.6 | 21.94 |
| TraesCS2D01G270000.2 | Wheat | nucleus | 10.65 | 20.9 |
| TraesCS6D01G069400.1 | Wheat | nucleus | 17.68 | 16.79 |
| TraesCS6D01G069300.1 | Wheat | nucleus | 17.68 | 16.7 |
| TraesCS2D01G280100.1 | Wheat | nucleus | 10.65 | 16.52 |
| TraesCS3D01G435200.1 | Wheat | nucleus | 9.51 | 15.82 |
| TraesCS3D01G017700.1 | Wheat | nucleus | 10.65 | 15.05 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G308300.1 | EnsemblPlantsGene:TraesCS7D01G308300 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF12 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | TIGR:cd04873 | MapMan:15.5.32 | MapMan:26.4.3.4.1 | : |
Description
No Description!
Coordinates
chr7D:-:390690188..390693218
Molecular Weight (calculated)
54496.6 Da
IEP (calculated)
5.119
GRAVY (calculated)
-0.297
Length
526 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSRFNNSLW MQEDDGHEQQ GLGHEQPPAM GMMPMMGQEA GHHHDQHLLA MPTGGGGGFR APSMLDEDWY FGAGAVGDGA ANGSMALVPA AMEASGSSSG
101: FGAGPQMFPL LNLGGTGPFD VSGFDLGASG AGGGDFTAFL GAGNASNTSP VSLLPHGNTG FLGSFGGFGT APAQMTEFGG LAGFDLFDTG AGGGGGGGSG
201: SSSEGPAAPV SLTAPFSGRG KAAVLRPLEI FPPVGAQPTL FQKRALRRNA GEEDDDKKRK AAAVAEGSAL SAGCDTMLDD ADEDMGSIDA SGLNYDSEDG
301: RGVEESGRKD GKESNANSTV TGGAAAEGKG KKKGMPAKNL MAERRRRKKL NDRLYMLRSV VPKISKMDRA SILGDAIEYL KELLHKISDL QNELESSPSM
401: PSLPPTPTSF HPLTPTLPAL PSRVKEELCP SALPSPTGQQ PTVEVRLREG RAVNIHMLCP RRPGLVLSAM KAIEALGLDV QQAVISCFNG FALDVFKAEQ
501: CKDGPGLQPE EIKAVLLQSA GFHPAM
101: FGAGPQMFPL LNLGGTGPFD VSGFDLGASG AGGGDFTAFL GAGNASNTSP VSLLPHGNTG FLGSFGGFGT APAQMTEFGG LAGFDLFDTG AGGGGGGGSG
201: SSSEGPAAPV SLTAPFSGRG KAAVLRPLEI FPPVGAQPTL FQKRALRRNA GEEDDDKKRK AAAVAEGSAL SAGCDTMLDD ADEDMGSIDA SGLNYDSEDG
301: RGVEESGRKD GKESNANSTV TGGAAAEGKG KKKGMPAKNL MAERRRRKKL NDRLYMLRSV VPKISKMDRA SILGDAIEYL KELLHKISDL QNELESSPSM
401: PSLPPTPTSF HPLTPTLPAL PSRVKEELCP SALPSPTGQQ PTVEVRLREG RAVNIHMLCP RRPGLVLSAM KAIEALGLDV QQAVISCFNG FALDVFKAEQ
501: CKDGPGLQPE EIKAVLLQSA GFHPAM
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
Arabidopsis Description
SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.