Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G281200.1 | Wheat | nucleus | 97.35 | 97.63 |
| TraesCS2B01G298600.1 | Wheat | nucleus | 98.23 | 97.08 |
| HORVU2Hr1G068960.2 | Barley | nucleus | 75.52 | 83.66 |
| KXG26070 | Sorghum | nucleus | 63.13 | 58.47 |
| Zm00001d004007_P001 | Maize | nucleus | 58.41 | 55.31 |
| Os04t0381700-00 | Rice | nucleus | 56.93 | 54.83 |
| Zm00001d025205_P001 | Maize | nucleus | 61.36 | 54.59 |
| GSMUA_Achr6P27600_001 | Banana | nucleus | 38.94 | 43.42 |
| KRH22827 | Soybean | nucleus | 30.38 | 31.89 |
| Bra000495.1-P | Field mustard | nucleus | 28.61 | 31.49 |
| KRH26533 | Soybean | nucleus | 29.79 | 31.37 |
| CDY31199 | Canola | nucleus | 28.91 | 31.31 |
| AT2G28160.1 | Thale cress | nucleus | 29.2 | 31.13 |
| CDY04543 | Canola | nucleus | 28.91 | 31.01 |
| CDX83286 | Canola | nucleus | 28.32 | 30.67 |
| Solyc06g051550.2.1 | Tomato | cytosol | 27.43 | 30.59 |
| PGSC0003DMT400048941 | Potato | nucleus | 28.02 | 30.45 |
| CDX71377 | Canola | nucleus | 28.32 | 30.38 |
| Bra011972.1-P | Field mustard | nucleus | 28.32 | 30.38 |
| KRH30560 | Soybean | nucleus | 27.73 | 30.13 |
| KRH25108 | Soybean | nucleus | 25.07 | 29.82 |
| VIT_06s0061g00720.t01 | Wine grape | nucleus | 27.14 | 29.3 |
| CDY30505 | Canola | nucleus | 26.55 | 28.66 |
| CDX77160 | Canola | nucleus | 26.55 | 28.48 |
| Bra034392.1-P | Field mustard | nucleus | 26.55 | 28.48 |
| TraesCS2D01G270000.2 | Wheat | nucleus | 16.81 | 21.27 |
| TraesCS2D01G270300.1 | Wheat | nucleus | 16.81 | 20.5 |
| TraesCS3D01G017700.1 | Wheat | nucleus | 18.58 | 16.94 |
| TraesCS3D01G435200.1 | Wheat | nucleus | 14.75 | 15.82 |
| TraesCS4D01G329100.1 | Wheat | nucleus | 15.93 | 15.43 |
| TraesCS4D01G328900.1 | Wheat | nucleus | 15.63 | 15.23 |
| TraesCS4D01G329000.2 | Wheat | nucleus | 15.04 | 14.45 |
| TraesCS4D01G328800.1 | Wheat | nucleus | 14.75 | 14.16 |
| TraesCS7D01G529200.1 | Wheat | nucleus | 13.86 | 13.91 |
| TraesCS4D01G328700.1 | Wheat | cytosol | 5.9 | 13.7 |
| TraesCS3D01G058100.1 | Wheat | nucleus | 11.5 | 13.18 |
| TraesCS3D01G434900.1 | Wheat | nucleus | 13.27 | 11.81 |
| TraesCS6D01G069400.1 | Wheat | nucleus | 17.99 | 11.01 |
| TraesCS4D01G051600.2 | Wheat | nucleus | 15.93 | 10.8 |
| TraesCS6D01G069300.1 | Wheat | nucleus | 17.7 | 10.77 |
| TraesCS7D01G308300.1 | Wheat | nucleus | 16.52 | 10.65 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G280100.1 | EnsemblPlantsGene:TraesCS2D01G280100 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF17 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.5 | : | : |
Description
No Description!
Coordinates
chr2D:-:351981596..351983267
Molecular Weight (calculated)
36691.0 Da
IEP (calculated)
5.438
GRAVY (calculated)
-0.548
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHHQRLLHL SPHQEHLMIG PGFFDVDPMH FHGDDAGFAV QPAADDGAWM EDLMHLGDEL FGGGGGGGAG DDNDMVGAAA ADQAWRQECE GASPDDHPCS
101: YDDVISPVSG EQGAGFEPSR DDSDLSGTRK RRDRSKTIVS ERKRRFRMKE KLYELRALVP NITKMDKASI IADAVAYVKN LQSHARKLKE DVATLEARPG
201: LAGRRQQQQQ QKQGRRQGQH GRNGGDDEGN SGSSRGGGGA RVTLVSAAQV GEGRFFVTVE CERRDGVAAP LCAAVEALAG FLVESSNLGC SSDRVVSTLT
301: LKVCETREDV MISDRTVKLW VMAALLSEGF RPEATSEIC
101: YDDVISPVSG EQGAGFEPSR DDSDLSGTRK RRDRSKTIVS ERKRRFRMKE KLYELRALVP NITKMDKASI IADAVAYVKN LQSHARKLKE DVATLEARPG
201: LAGRRQQQQQ QKQGRRQGQH GRNGGDDEGN SGSSRGGGGA RVTLVSAAQV GEGRFFVTVE CERRDGVAAP LCAAVEALAG FLVESSNLGC SSDRVVSTLT
301: LKVCETREDV MISDRTVKLW VMAALLSEGF RPEATSEIC
001: MEGRVNALSN INDLELHNFL VDPNFDQFIN LIRGDHQTID ENPVLDFDLG PLQNSPCFID ENQFIPTPVD DLFDELPDLD SNVAESFRSF DGDSVRAGGE
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT
Arabidopsis Description
FITTranscription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Source:UniProtKB/Swiss-Prot;Acc:Q0V7X4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.