Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011972.1-P | Field mustard | nucleus | 96.2 | 96.2 |
| CDY04543 | Canola | nucleus | 95.89 | 95.89 |
| AT2G28160.1 | Thale cress | nucleus | 87.66 | 87.11 |
| CDY31199 | Canola | nucleus | 81.96 | 82.75 |
| CDX77160 | Canola | nucleus | 82.59 | 82.59 |
| CDY30505 | Canola | nucleus | 81.96 | 82.48 |
| CDX83286 | Canola | nucleus | 81.33 | 82.11 |
| KRH22827 | Soybean | nucleus | 53.48 | 52.32 |
| VIT_06s0061g00720.t01 | Wine grape | nucleus | 50.0 | 50.32 |
| KRH26533 | Soybean | nucleus | 50.0 | 49.07 |
| KRH25108 | Soybean | nucleus | 43.67 | 48.42 |
| KRH30560 | Soybean | nucleus | 46.2 | 46.79 |
| Solyc06g051550.2.1 | Tomato | cytosol | 44.62 | 46.38 |
| PGSC0003DMT400048941 | Potato | nucleus | 45.25 | 45.83 |
| GSMUA_Achr6P27600_001 | Banana | nucleus | 30.38 | 31.58 |
| HORVU2Hr1G068960.2 | Barley | nucleus | 27.85 | 28.76 |
| TraesCS2A01G281200.1 | Wheat | nucleus | 30.7 | 28.7 |
| TraesCS2D01G280100.1 | Wheat | nucleus | 30.38 | 28.32 |
| TraesCS2B01G298600.1 | Wheat | nucleus | 30.7 | 28.28 |
| KXG26070 | Sorghum | nucleus | 31.33 | 27.05 |
| Os04t0381700-00 | Rice | nucleus | 30.06 | 26.99 |
| Zm00001d004007_P001 | Maize | nucleus | 30.38 | 26.82 |
| CDX98033 | Canola | nucleus | 14.87 | 25.41 |
| CDY42237 | Canola | nucleus | 19.3 | 25.21 |
| Zm00001d025205_P001 | Maize | nucleus | 30.38 | 25.2 |
| CDY19416 | Canola | nucleus | 14.56 | 24.86 |
| CDY47924 | Canola | nucleus | 19.3 | 24.8 |
| CDY38270 | Canola | nucleus | 19.3 | 24.8 |
| CDY43542 | Canola | nucleus | 20.57 | 24.71 |
| CDX68608 | Canola | nucleus | 20.25 | 24.33 |
| CDY46719 | Canola | nucleus | 20.25 | 24.24 |
| CDY30182 | Canola | nucleus | 18.67 | 24.18 |
| CDX88610 | Canola | nucleus | 18.67 | 23.98 |
| CDY52738 | Canola | cytosol | 12.34 | 23.64 |
| CDY11882 | Canola | nucleus | 18.35 | 23.58 |
| CDX97027 | Canola | nucleus | 17.41 | 18.46 |
| CDX69821 | Canola | nucleus | 17.41 | 18.15 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 8.86 | 17.72 |
| CDX97028 | Canola | cytosol, plastid, vacuole | 5.06 | 16.0 |
| CDY69978 | Canola | nucleus | 18.04 | 15.92 |
| CDY37835 | Canola | nucleus | 17.72 | 15.64 |
| CDY08769 | Canola | nucleus | 17.09 | 15.04 |
| CDX99537 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 9.49 | 14.85 |
| CDY54227 | Canola | nucleus | 17.41 | 14.47 |
| CDY34878 | Canola | cytosol | 16.77 | 13.8 |
| CDX93399 | Canola | nucleus | 17.41 | 13.41 |
| CDY21073 | Canola | nucleus | 18.04 | 13.23 |
| CDY37964 | Canola | nucleus | 16.77 | 13.05 |
| CDY28529 | Canola | nucleus | 18.04 | 12.98 |
| CDY34601 | Canola | nucleus | 18.04 | 12.84 |
| CDY31399 | Canola | nucleus | 22.47 | 12.52 |
| CDX71316 | Canola | nucleus | 22.47 | 12.5 |
| CDY02227 | Canola | nucleus | 21.52 | 11.97 |
| CDX89760 | Canola | nucleus | 21.52 | 11.97 |
| CDY48974 | Canola | nucleus | 17.72 | 11.69 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.5 | Gene3D:4.10.280.10 | GO:A0A078C3A1 | EnsemblPlants:CDX71377 | ProteinID:CDX71377 |
| ProteinID:CDX71377.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00148180001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF17 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEC90F | InterPro:bHLH_dom |
Description
BnaC04g16120D
Coordinates
chrLK031793:-:259788..261391
Molecular Weight (calculated)
35273.6 Da
IEP (calculated)
4.871
GRAVY (calculated)
-0.467
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGRVIALTN LNDLELHNFL VDPNFDQFIN LIRGDDQTIE NPPLDFDLGG PLHNSPCFID ENQFIQTPVD NLFDELPDID SNVAESFRSF EGESVVRASG
101: EDDYNDGDDS SATTTNIDGS RKKKTDRSRT LISERKRRGR MKDKLYALRS LVPNITKMDK ASIVGDAVAY VQELQSQAKK LKADIAGLEA SLTSTGGYQK
201: PAPVAQKSHT FRCINPPVSK KINQMDVIQV EEKEFYVRLV CNKGQGVAAS LYKSLESLTS FQVQNSNLSS PSPETYILTY TLDGTCFEQS LNLPNLKLWI
301: TGSLLNQGFE FIKPFN
101: EDDYNDGDDS SATTTNIDGS RKKKTDRSRT LISERKRRGR MKDKLYALRS LVPNITKMDK ASIVGDAVAY VQELQSQAKK LKADIAGLEA SLTSTGGYQK
201: PAPVAQKSHT FRCINPPVSK KINQMDVIQV EEKEFYVRLV CNKGQGVAAS LYKSLESLTS FQVQNSNLSS PSPETYILTY TLDGTCFEQS LNLPNLKLWI
301: TGSLLNQGFE FIKPFN
001: MEGRVNALSN INDLELHNFL VDPNFDQFIN LIRGDHQTID ENPVLDFDLG PLQNSPCFID ENQFIPTPVD DLFDELPDLD SNVAESFRSF DGDSVRAGGE
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT
Arabidopsis Description
FITTranscription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Source:UniProtKB/Swiss-Prot;Acc:Q0V7X4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.