Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43542 | Canola | nucleus | 97.72 | 97.72 |
| Bra011152.1-P | Field mustard | nucleus | 87.83 | 93.15 |
| CDY46719 | Canola | nucleus | 84.03 | 83.71 |
| CDY30182 | Canola | nucleus | 75.29 | 81.15 |
| AT4G29930.3 | Thale cress | nucleus | 73.76 | 73.76 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 43.73 | 72.78 |
| CDY38270 | Canola | nucleus | 52.85 | 56.5 |
| CDY47924 | Canola | nucleus | 52.47 | 56.1 |
| CDY42237 | Canola | nucleus | 51.33 | 55.79 |
| CDY11882 | Canola | nucleus | 51.33 | 54.88 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 50.19 | 54.1 |
| CDX88610 | Canola | nucleus | 50.57 | 54.06 |
| CDY52738 | Canola | cytosol | 30.42 | 48.48 |
| Solyc07g018010.2.1 | Tomato | nucleus | 45.25 | 47.04 |
| PGSC0003DMT400010463 | Potato | nucleus | 44.87 | 46.83 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 41.44 | 41.92 |
| PGSC0003DMT400044959 | Potato | nucleus | 36.5 | 41.56 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 32.7 | 40.95 |
| Solyc05g014590.2.1 | Tomato | nucleus | 34.22 | 38.96 |
| TraesCS2D01G270300.1 | Wheat | nucleus | 35.36 | 33.45 |
| TraesCS2D01G270000.2 | Wheat | nucleus | 33.84 | 33.21 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 34.98 | 33.09 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 34.98 | 33.09 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 33.84 | 32.48 |
| Zm00001d025141_P003 | Maize | nucleus | 31.18 | 31.3 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 30.8 | 30.57 |
| Zm00001d024522_P001 | Maize | nucleus | 29.66 | 30.23 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 34.6 | 29.84 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 33.46 | 29.83 |
| TraesCSU01G138900.1 | Wheat | nucleus | 28.9 | 29.57 |
| TraesCS5A01G533200.1 | Wheat | nucleus | 28.14 | 28.91 |
| EES14602 | Sorghum | nucleus | 31.56 | 28.82 |
| TraesCSU01G138400.2 | Wheat | nucleus | 27.38 | 28.69 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 27.76 | 28.52 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 27.76 | 28.4 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 16.35 | 28.1 |
| TraesCS5A01G533900.1 | Wheat | nucleus | 25.1 | 27.97 |
| Os04t0301500-01 | Rice | nucleus | 32.7 | 27.74 |
| Zm00001d004095_P001 | Maize | nucleus | 32.32 | 27.69 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 25.86 | 27.09 |
| TraesCS3A01G028200.3 | Wheat | nucleus | 27.76 | 26.94 |
| HORVU2Hr1G066000.7 | Barley | nucleus | 27.76 | 26.64 |
| EES05013 | Sorghum | nucleus | 28.14 | 26.24 |
| CDY19416 | Canola | nucleus | 18.25 | 25.95 |
| CDX98033 | Canola | nucleus | 18.25 | 25.95 |
| TraesCS3A01G442600.1 | Wheat | nucleus | 28.14 | 25.34 |
| Os04t0300600-00 | Rice | cytosol | 28.14 | 25.08 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 30.04 | 24.38 |
| TraesCS3D01G435200.1 | Wheat | nucleus | 28.52 | 23.73 |
| CDY31199 | Canola | nucleus | 25.1 | 21.09 |
| CDY30505 | Canola | nucleus | 25.1 | 21.02 |
| TraesCS3D01G017700.1 | Wheat | nucleus | 29.66 | 20.97 |
| CDX77160 | Canola | nucleus | 25.1 | 20.89 |
| CDX83286 | Canola | nucleus | 24.71 | 20.77 |
| CDY04543 | Canola | nucleus | 24.71 | 20.57 |
| CDX71377 | Canola | nucleus | 24.33 | 20.25 |
| CDX69821 | Canola | nucleus | 22.43 | 19.47 |
| CDX97027 | Canola | nucleus | 22.05 | 19.46 |
| CDY37835 | Canola | nucleus | 25.1 | 18.44 |
| CDY69978 | Canola | nucleus | 24.71 | 18.16 |
| CDX97028 | Canola | cytosol, plastid, vacuole | 6.84 | 18.0 |
| CDY08769 | Canola | nucleus | 24.33 | 17.83 |
| CDX99537 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 12.55 | 16.34 |
| CDY34878 | Canola | cytosol | 19.39 | 13.28 |
| CDY54227 | Canola | nucleus | 18.63 | 12.89 |
| CDY37964 | Canola | nucleus | 19.77 | 12.81 |
| CDX93399 | Canola | nucleus | 19.01 | 12.2 |
| CDY21073 | Canola | nucleus | 19.77 | 12.06 |
| CDY34601 | Canola | nucleus | 20.15 | 11.94 |
| CDY28529 | Canola | nucleus | 19.77 | 11.85 |
| CDY48974 | Canola | nucleus | 19.77 | 10.86 |
| CDY31399 | Canola | nucleus | 22.43 | 10.41 |
| CDX71316 | Canola | nucleus | 22.43 | 10.39 |
| CDX89760 | Canola | nucleus | 21.67 | 10.04 |
| CDY02227 | Canola | nucleus | 21.29 | 9.86 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078C0F8 | EnsemblPlants:CDX68608 | ProteinID:CDX68608 | ProteinID:CDX68608.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00130251001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR31945 |
| PANTHER:PTHR31945:SF26 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EB4066 | InterPro:bHLH_dom | SEG:seg |
Description
BnaC01g08450D
Coordinates
chrLK031789:+:139080..141578
Molecular Weight (calculated)
30076.4 Da
IEP (calculated)
4.693
GRAVY (calculated)
-0.519
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDLDDEYKN YWETTMFFQN QELEFDSWPL EEAFSGSGES SSPDGAATSP VTSKNVASER KRREKLNQRL FALRSVVPNI SKLDKASVIR DSINYLQDLI
101: DQEKKLEAEI RELESRSMLL DNPTRDYDCI NNFAGNQQQD LSCINAMRSK KSRQMDYNTF GSSITRVHNH SLIEVLEMTV TCMGEKTVVV CITCSKKRET
201: MLQLCKLLES LNLNILTTNF SSFSSRLSTT LFLQANEEEK STVETKIQTA IAAYNDPNCF INF
101: DQEKKLEAEI RELESRSMLL DNPTRDYDCI NNFAGNQQQD LSCINAMRSK KSRQMDYNTF GSSITRVHNH SLIEVLEMTV TCMGEKTVVV CITCSKKRET
201: MLQLCKLLES LNLNILTTNF SSFSSRLSTT LFLQANEEEK STVETKIQTA IAAYNDPNCF INF
001: MEDLDHEYKN YWETTMFFQN QELEFDSWPM EEAFSGSGES SSPDGAATSP ASSKNVVSER NRRQKLNQRL FALRSVVPNI SKLDKASVIK DSIDYMQELI
101: DQEKTLEAEI RELESRSTLL ENPVRDYDCN FAETHLQDFS DNNDMRSKKF KQMDYSTRVQ HYPIEVLEMK VTWMGEKTVV VCITCSKKRE TMVQLCKVLE
201: SLNLNILTTN FSSFTSRLST TLFLQADEEE SSAVEAKIQM AIAAYNDPNC LINF
101: DQEKTLEAEI RELESRSTLL ENPVRDYDCN FAETHLQDFS DNNDMRSKKF KQMDYSTRVQ HYPIEVLEMK VTWMGEKTVV VCITCSKKRE TMVQLCKVLE
201: SLNLNILTTN FSSFTSRLST TLFLQADEEE SSAVEAKIQM AIAAYNDPNC LINF
Arabidopsis Description
BHLH27Transcription factor bHLH27 [Source:UniProtKB/Swiss-Prot;Acc:Q700E3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.