Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34878 | Canola | cytosol | 89.74 | 88.8 |
| CDX93399 | Canola | nucleus | 78.42 | 72.68 |
| CDY37964 | Canola | nucleus | 77.11 | 72.17 |
| AT1G10610.1 | Thale cress | nucleus | 73.42 | 63.27 |
| Solyc05g005300.2.1 | Tomato | nucleus | 36.32 | 28.63 |
| KRH45665 | Soybean | nucleus | 35.79 | 27.42 |
| VIT_01s0127g00650.t01 | Wine grape | nucleus | 11.05 | 23.86 |
| CDY02227 | Canola | nucleus | 34.47 | 23.06 |
| CDX71316 | Canola | nucleus | 34.21 | 22.89 |
| CDY31399 | Canola | nucleus | 33.95 | 22.75 |
| CDX89760 | Canola | nucleus | 33.95 | 22.71 |
| CDY38270 | Canola | nucleus | 13.95 | 21.54 |
| CDY47924 | Canola | nucleus | 13.68 | 21.14 |
| CDY19416 | Canola | nucleus | 10.26 | 21.08 |
| CDX98033 | Canola | nucleus | 10.26 | 21.08 |
| CDX88610 | Canola | nucleus | 13.42 | 20.73 |
| CDY42237 | Canola | nucleus | 12.89 | 20.25 |
| CDY11882 | Canola | nucleus | 12.89 | 19.92 |
| CDY30182 | Canola | nucleus | 12.63 | 19.67 |
| CDY43542 | Canola | nucleus | 12.89 | 18.63 |
| CDX68608 | Canola | nucleus | 12.89 | 18.63 |
| CDX83286 | Canola | nucleus | 15.26 | 18.53 |
| CDY31199 | Canola | nucleus | 15.0 | 18.21 |
| CDY46719 | Canola | nucleus | 12.63 | 18.18 |
| CDX97027 | Canola | nucleus | 14.21 | 18.12 |
| CDX69821 | Canola | nucleus | 13.95 | 17.49 |
| CDX71377 | Canola | nucleus | 14.47 | 17.41 |
| CDY04543 | Canola | nucleus | 14.21 | 17.09 |
| CDY69978 | Canola | nucleus | 15.53 | 16.48 |
| CDY08769 | Canola | nucleus | 15.53 | 16.43 |
| CDY30505 | Canola | nucleus | 13.42 | 16.24 |
| CDY37835 | Canola | nucleus | 15.26 | 16.2 |
| CDX77160 | Canola | nucleus | 13.42 | 16.14 |
| CDY52738 | Canola | cytosol | 6.58 | 15.15 |
| CDX99537 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 7.63 | 14.36 |
| CDX97028 | Canola | cytosol, plastid, vacuole | 3.68 | 14.0 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 5.26 | 12.66 |
| CDY28529 | Canola | nucleus | 14.47 | 12.53 |
| CDY21073 | Canola | nucleus | 13.42 | 11.83 |
| CDY34601 | Canola | nucleus | 13.68 | 11.71 |
| CDY48974 | Canola | nucleus | 14.47 | 11.48 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078IW50 | UniProt:A0A078IW50 | EnsemblPlants:CDY54227 | ProteinID:CDY54227 |
| ProteinID:CDY54227.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00013626001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MYC/MYB_N | PFAM:PF00010 |
| PFAM:PF14215 | PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF14 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0004EDD5CC | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
BnaC08g49840DBnaC08g49840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IW50]
Coordinates
chrLK033293:+:9989..11637
Molecular Weight (calculated)
43790.8 Da
IEP (calculated)
5.400
GRAVY (calculated)
-0.373
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MMRGVERVKE FLRPLVDSRD WDFCVIWKLG DDPSRFIEWV GCCCSGSYTD TNIKHENVEE EEEEEEERQK MGSICRDEHN KHHIRSLSCE ALSRFPLFIP
101: LYPGIHGEVV MSKSPKWLVN SSPGSKQDIF RTRVLVPVRD GLVELFSFMM KPVDESMVDL IISRCNAFLE QSLPCLVMNK EEDVVMQDII DGKANKKLTE
201: EHFKSKNLHS ERKRRERINQ RIYALRALVP VITKMNKNGT ISDAVDYINE LLVEKQTLED ELSGINEIEC RAEEEAVRVS SKLNMNVNNE VNLEVHETGE
301: GEFLIRVTQE HKRDGFKRLI EAVDSCGLEI INVNVTRLDL TVMTILNVKA NKYGITREDL RDLLFKMIIT SAAVSVKHCT
101: LYPGIHGEVV MSKSPKWLVN SSPGSKQDIF RTRVLVPVRD GLVELFSFMM KPVDESMVDL IISRCNAFLE QSLPCLVMNK EEDVVMQDII DGKANKKLTE
201: EHFKSKNLHS ERKRRERINQ RIYALRALVP VITKMNKNGT ISDAVDYINE LLVEKQTLED ELSGINEIEC RAEEEAVRVS SKLNMNVNNE VNLEVHETGE
301: GEFLIRVTQE HKRDGFKRLI EAVDSCGLEI INVNVTRLDL TVMTILNVKA NKYGITREDL RDLLFKMIIT SAAVSVKHCT
001: MMMMRGGERV KEFLRPFVDS RTWDLCVIWK LGDDPSRFIE WVGCCCSGCY IDKNIKLENS EEGGTGRKKK ASFCRDDHNK HRIRTLACEA LSRFPLFMPL
101: YPGIHGEVVM SKSPKWLVNS GSKMEMFSTR VLVPVSDGLV ELFAFDMRPF DESMVHLIMS RCTTFFEPFP EQRLQFRIIP RAEESMSSGV NLSVEGGGSS
201: SVSNPSSETQ NLFGNYPNAS CVEILREEQT PCLIMNKEKD VVVQNANDSK ANKKLLPTEN FKSKNLHSER KRRERINQAM YGLRAVVPKI TKLNKIGIFS
301: DAVDYINELL VEKQKLEDEL KGINEMECKE IAAEEQSAIA DPEAERVSSK SNKRVKKNEV KIEVHETGER DFLIRVVQEH KQDGFKRLIE AVDLCELEII
401: DVNFTRLDLT VMTVLNVKAN KDGIACGILR DLLLKMMITS I
101: YPGIHGEVVM SKSPKWLVNS GSKMEMFSTR VLVPVSDGLV ELFAFDMRPF DESMVHLIMS RCTTFFEPFP EQRLQFRIIP RAEESMSSGV NLSVEGGGSS
201: SVSNPSSETQ NLFGNYPNAS CVEILREEQT PCLIMNKEKD VVVQNANDSK ANKKLLPTEN FKSKNLHSER KRRERINQAM YGLRAVVPKI TKLNKIGIFS
301: DAVDYINELL VEKQKLEDEL KGINEMECKE IAAEEQSAIA DPEAERVSSK SNKRVKKNEV KIEVHETGER DFLIRVVQEH KQDGFKRLIE AVDLCELEII
401: DVNFTRLDLT VMTVLNVKAN KDGIACGILR DLLLKMMITS I
Arabidopsis Description
BHLH90Transcription factor bHLH90 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNR2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.